More result(s)
More result(s)

Gene expression calls logoGene expression calls

This page provides calls of baseline presence/absence of expression, and of differential over-/under-expression, either in single species, or made comparable between multiple species. Click on a species or a group of species to browse files available for download.See also processed expression values, and database statistics.

Single-species(click on species to see more details)
H. sapiens

H. sapiens

human

M. musculus

M. musculus

mouse

D. rerio

D. rerio

zebrafish

D. melanogaster

D. melanogaster

fruit fly

C. elegans

C. elegans

nematode

P. paniscus

P. paniscus

bonobo

P. troglodytes

P. troglodytes

chimpanzee

G. gorilla

G. gorilla

gorilla

M. mulatta

M. mulatta

macaque

R. norvegicus

R. norvegicus

rat

B. taurus

B. taurus

cattle

S. scrofa

S. scrofa

pig

M. domestica

M. domestica

opossum

O. anatinus

O. anatinus

platypus

G. gallus

G. gallus

chicken

A. carolinensis

A. carolinensis

green anole

X. tropicalis

X. tropicalis

western clawed frog

Cross

Hierarchical orthologous groups

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OMA IDGene IDGene name

This file provides groups of genes orthologous between the selected taxa.

Presence/Absence of expression

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Not enough data

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Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameExpressionCall quality
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Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameExpressionCall qualityIncluding observed dataAffymetrix dataAffymetrix call qualityIncluding Affymetrix observed dataEST dataEST call qualityIncluding EST observed dataIn situ dataIn situ call qualityIncluding in situ observed dataRNA-Seq dataRNA-Seq call qualityIncluding RNA-Seq observed data

Over-/Under-expression across anatomy

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Not enough data

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Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameDifferential expressionCall quality
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Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameDifferential expressionCall qualityAffymetrix dataAffymetrix call qualityAffymetrix best supporting p-valueAffymetrix analysis count supporting Affymetrix callAffymetrix analysis count in conflict with Affymetrix callRNA-Seq dataRNA-Seq call qualityRNA-Seq best supporting p-valueRNA-Seq analysis count supporting RNA-Seq callRNA-Seq analysis count in conflict with RNA-Seq call
12345678910111213...(species*4 + 6)(species*4 + 7)
OMA IDAnatomical entity IDsAnatomical entity namesDevelopmental stage IDDevelopmental stage nameOver-expressed gene count for species1Under-expressed gene count for species1Not diff. expressed gene count for species1NA gene count for species1Over-expressed gene count for species2Under-expressed gene count for species2Not diff. expressed gene count for species2NA gene count for species2...Gene IDsGene names
12345678910111213141516171819202122
OMA IDGene IDGene nameAnatomical entity IDsAnatomical entity namesDevelopmental stage IDDevelopmental stage nameLatin species nameDifferential expressionCall qualityAffymetrix dataAffymetrix call qualityAffymetrix best supporting p-valueAffymetrix analysis count supporting Affymetrix callAffymetrix analysis count in conflict with Affymetrix callRNA-Seq dataRNA-Seq call qualityRNA-Seq best supporting p-valueRNA-Seq analysis count supporting RNA-Seq callRNA-Seq analysis count in conflict with RNA-Seq callAnatomy homology CIO IDAnatomy homology CIO name

Over-/Under-expression across life stages

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Not enough data

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Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameDifferential expressionCall quality
123456789101112131415161718
Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameDifferential expressionCall qualityAffymetrix dataAffymetrix call qualityAffymetrix best supporting p-valueAffymetrix analysis count supporting Affymetrix callAffymetrix analysis count in conflict with Affymetrix callRNA-Seq dataRNA-Seq call qualityRNA-Seq best supporting p-valueRNA-Seq analysis count supporting RNA-Seq callRNA-Seq analysis count in conflict with RNA-Seq call
Multi-species(orthologous genes in homologous anatomical structures)
H. sapiensM. musculus
human/mouse
M. musculusR. norvegicus
Murinae
P. troglodytesM. mulatta
macaque/chimpanzee
H. sapiensG. gorillaP. troglodytesM. mulattaM. musculusR. norvegicusB. taurusM. domestica
Theria
H. sapiensG. gorillaP. troglodytesM. mulattaM. musculusR. norvegicusB. taurusM. domesticaO. anatinus
Mammalia
H. sapiensG. gorillaP. troglodytesM. mulattaM. musculusR. norvegicusB. taurusM. domesticaO. anatinusG. gallus
Amniota
H. sapiensG. gorillaP. troglodytesM. mulattaM. musculusR. norvegicusB. taurusM. domesticaO. anatinusG. gallusX. tropicalis
Tetrapoda

Images from Wikimedia Commons. In most cases, pictures corresponds to the sequenced strains. Show information about original images.

Homo sapiens picture by Leonardo da Vinci (Life time: 1519) [Public domain]. See H. sapiens picture via Wikimedia Commons

Mus musculus picture by Rasbak [GFDL or CC-BY-SA-3.0], See M. musculus picture via Wikimedia Commons

Danio rerio picture by Azul (Own work) [see page for license], See D. rerio picture via Wikimedia Commons

Drosophila melanogaster picture by André Karwath aka Aka (Own work) [CC-BY-SA-2.5], See D. melanogaster picture via Wikimedia Commons

Caenorhabditis elegans picture by Bob Goldstein, UNC Chapel Hill http://bio.unc.edu/people/faculty/goldstein/ (Own work) [CC-BY-SA-3.0], See C. elegans picture via Wikimedia Commons

Pan paniscus picture by Ltshears (Own work) [CC-BY-SA-3.0 or GFDL], See P. paniscus picture via Wikimedia Commons

Pan troglodytes picture by Thomas Lersch (Own work) [GFDL, CC-BY-SA-3.0 or CC-BY-2.5], See P. troglodytes picture via Wikimedia Commons

Gorilla gorilla picture by Brocken Inaglory (Own work) [CC-BY-SA-3.0 or GFDL], See G. gorilla picture via Wikimedia Commons

Pongo pygmaeus picture by Greg Hume (Own work) [CC-BY-SA-3.0], See P. pygmaeus picture via Wikimedia Commons

Macaca mulatta picture by Aiwok (Own work) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See M. mulatta picture via Wikimedia Commons

Rattus norvegicus picture by Reg Mckenna (originally posted to Flickr as Wild Rat) [CC-BY-2.0], See R. norvegicus picture via Wikimedia Commons

Bos taurus picture by User Robert Merkel on en.wikipedia (US Department of Agriculture) [Public domain], See B. taurus picture via Wikimedia Commons

Sus scrofa picture by Joshua Lutz (Own work) [Public domain], See S. scrofa picture via Wikimedia Commons

Monodelphis domestica picture by Marsupial Genome Sheds Light on the Evolution of Immunity. Hill E, PLoS Biology Vol. 4/3/2006, e75 http://dx.doi.org/10.1371/journal.pbio.0040075 [CC-BY-2.5], See M. domestica picture via Wikimedia Commons

Ornithorhynchus anatinus picture by Dr. Philip Bethge (private) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See O. anatinus picture via Wikimedia Commons

Gallus gallus picture by Subramanya C K (Own work) [CC-BY-SA-3.0], See G. gallus picture via Wikimedia Commons

Anolis carolinensis picture by PiccoloNamek (Moved from Image:P1010027.jpg) [GFDL or CC-BY-SA-3.0], See A. carolinensis picture via Wikimedia Commons

Xenopus tropicalis picture by Václav Gvoždík (http://calphotos.berkeley.edu) [CC-BY-SA-2.5, CC-BY-SA-2.5 or CC-BY-SA-3.0], See X. tropicalis picture via Wikimedia Commons

Tetraodon nigroviridis picture by Starseed (Own work) [CC-BY-SA-3.0-de or CC-BY-SA-3.0], See T. nigroviridis picture via Wikimedia Commons