H. sapiensGene: COL9A1 - ENSG00000112280 - Homo sapiens (human)

Gene Information

Ensembl IDENSG00000112280
NameCOL9A1
Descriptioncollagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]
OrganismHomo sapiens (human)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000979tibia
  • HsapDv:00000856-12 year-old child stage (human)
  • HsapDv:0000086adolescent stage (human)
13.7
  • 13.7
  • 134
AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007220late embryonic stage
842
  • 842
AEIR
  • AEIR
UBERON:0002367prostate gland
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • UBERON:0000104life cycle
4.57e3
  • 4.57e3
  • 8.69e3
  • 1.37e4
  • 2.43e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001871temporal lobe
  • HsapDv:0000089young adult stage (human)
9.16e3
  • 9.16e3
AEIR
  • AEIR
CL:0000019sperm
  • HsapDv:0000088human early adulthood stage (human)
9.42e3
  • 9.42e3
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • HsapDv:0000087human adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
1.01e4
  • 1.01e4
  • 1.23e4
  • 1.49e4
  • 3.00e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • HsapDv:0000199fifth LMP month human stage (human)
  • HsapDv:0000198fourth LMP month human stage (human)
1.01e4
  • 1.01e4
  • 1.22e4
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.06e4
  • 1.06e4
  • 1.06e4
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000198fourth LMP month human stage (human)
  • HsapDv:0000197third LMP month human stage (human)
  • UBERON:0000111organogenesis stage
  • HsapDv:0000199fifth LMP month human stage (human)
  • HsapDv:0000087human adult stage (human)
1.06e4
  • 1.06e4
  • 1.55e4
  • 1.94e4
  • 2.01e4
  • 2.78e4
  • 2.97e4
  • 3.05e4
  • 3.09e4
  • 4.79e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • HsapDv:000009025-44 year-old human stage (human)
  • UBERON:0007220late embryonic stage
1.17e4
  • 1.17e4
  • 4.79e4
AEIR
  • AEIR
  • AEIR
UBERON:0003911choroid plexus epithelium
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
AEIR
  • AEIR
UBERON:0002185bronchus
  • HsapDv:000009025-44 year-old human stage (human)
1.22e4
  • 1.22e4
AEIR
  • AEIR
UBERON:0000922embryo
  • HsapDv:0000021CS14 (human)
  • HsapDv:0000018Carnegie stage 11 (human)
  • UBERON:0000111organogenesis stage
1.33e4
  • 1.33e4
  • 1.56e4
  • 4.59e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
1.35e4
  • 1.35e4
  • 1.41e4
AEIR
  • AEIR
  • AEIR
UBERON:0001874putamen
  • HsapDv:0000089young adult stage (human)
1.38e4
  • 1.38e4
AEIR
  • AEIR
UBERON:0001295endometrium
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • UBERON:0000104life cycle
  • HsapDv:0000088human early adulthood stage (human)
  • HsapDv:0000087human adult stage (human)
1.40e4
  • 1.40e4
  • 1.47e4
  • 2.95e4
  • 3.56e4
  • 4.79e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • HsapDv:0000089young adult stage (human)
1.46e4
  • 1.46e4
AEIR
  • AEIR
UBERON:0005363inferior vagus X ganglion
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.46e4
  • 1.46e4
  • 1.72e4
AEIR
  • AEIR
  • AEIR
UBERON:0002038substantia nigra
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000087human adult stage (human)
1.48e4
  • 1.48e4
  • 2.08e4
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
1.48e4
  • 1.48e4
  • 2.21e4
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000091human late adulthood stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.48e4
  • 1.48e4
  • 1.79e4
  • 1.86e4
  • 1.96e4
  • 2.13e4
  • 2.20e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001873caudate nucleus
  • HsapDv:0000083infant stage (human)
  • HsapDv:0000086adolescent stage (human)
  • HsapDv:00000842-5 year-old child stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:00000856-12 year-old child stage (human)
  • HsapDv:0000089young adult stage (human)
1.49e4
  • 1.49e4
  • 1.52e4
  • 1.57e4
  • 1.73e4
  • 1.81e4
  • 2.03e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • HsapDv:0000092human middle aged stage (human)
1.58e4
  • 1.58e4
  • 2.54e4
AEIR
  • AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • HsapDv:000009025-44 year-old human stage (human)
1.58e4
  • 1.58e4
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.61e4
  • 1.61e4
  • 1.78e4
  • 1.84e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006483Brodmann (1909) area 46
  • HsapDv:00000842-5 year-old child stage (human)
  • HsapDv:0000086adolescent stage (human)
1.63e4
  • 1.63e4
  • 1.92e4
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • HsapDv:0000197third LMP month human stage (human)
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • HsapDv:00000842-5 year-old child stage (human)
  • HsapDv:0000083infant stage (human)
  • HsapDv:00000856-12 year-old child stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000086adolescent stage (human)
  • HsapDv:0000089young adult stage (human)
1.65e4
  • 1.65e4
  • 1.71e4
  • 1.84e4
  • 1.88e4
  • 1.99e4
  • 2.02e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
1.66e4
  • 1.66e4
  • 1.68e4
  • 1.92e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002691ventral tegmental area
  • HsapDv:0000089young adult stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.68e4
  • 1.68e4
  • 1.90e4
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • HsapDv:000009025-44 year-old human stage (human)
1.75e4
  • 1.75e4
AEIR
  • AEIR
UBERON:0001906subthalamic nucleus
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
1.79e4
  • 1.79e4
  • 1.81e4
AEIR
  • AEIR
  • AEIR
UBERON:0002728entorhinal cortex
  • HsapDv:000009580 year-old and over human stage (human)
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
1.81e4
  • 1.81e4
  • 1.85e4
  • 1.87e4
  • 1.89e4
  • 2.13e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009465-79 year-old human stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
1.86e4
  • 1.86e4
  • 2.08e4
  • 2.11e4
  • 2.17e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • HsapDv:000009025-44 year-old human stage (human)
1.86e4
  • 1.86e4
AEIR
  • AEIR
UBERON:0002581postcentral gyrus
  • HsapDv:000009025-44 year-old human stage (human)
  • HsapDv:0000089young adult stage (human)
  • HsapDv:0000092human middle aged stage (human)
  • HsapDv:000009580 year-old and over human stage (human)
1.91e4
  • 1.91e4
  • 2.05e4
  • 2.10e4
  • 2.13e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001844cochlea
  • UBERON:0007220late embryonic stage
1.94e4
  • 1.94e4
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • HsapDv:000009025-44 year-old human stage (human)
2.20e4
  • 2.20e4
AEIR
  • AEIR
UBERON:0004801cervix epithelium
  • HsapDv:0000092human middle aged stage (human)
2.29e4
  • 2.29e4
AEIR
  • AEIR
UBERON:0002477medial globus pallidus
  • HsapDv:0000087human adult stage (human)
2.31e4
  • 2.31e4
AEIR
  • AEIR
UBERON:0003379cardiac muscle of right atrium
  • HsapDv:000009465-79 year-old human stage (human)
2.32e4
  • 2.32e4
AEIR
  • AEIR
UBERON:0001890forebrain
  • HsapDv:0000199fifth LMP month human stage (human)
2.63e4
  • 2.63e4
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000111organogenesis stage
  • HsapDv:0000087human adult stage (human)
3.72e4
  • 3.72e4
  • 4.77e4
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • UBERON:0000104life cycle
  • HsapDv:0000093human aged stage (human)
4.11e4
  • 4.11e4
  • 4.36e4
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • HsapDv:0000087human adult stage (human)
4.69e4
  • 4.69e4
AEIR
  • AEIR
UBERON:0002240spinal cord
  • HsapDv:0000087human adult stage (human)
4.79e4
  • 4.79e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.79e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
Sources of raw data: