A. carolinensis Gene: SPTLC1 - ENSACAG00000001052 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000001052
NameSPTLC1
Descriptionserine palmitoyltransferase, long chain base subunit 1 [Source:HGNC Symbol;Acc:HGNC:11277]
OrganismAnolis carolinensis (green anole)
Synonym(s)hlcb1, hsan1, hsn1, lcb1, spti
Orthologs(s)25 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:1000003dewlap
  • UBERON:0000104life cycle
2.41e3
  • 2.41e3
88.05
  • 88.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.44e3
  • 2.44e3
87.88
  • 87.88
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
2.55e3
  • 2.55e3
87.36
  • 87.36
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.00e3
  • 3.00e3
  • 4.89e3
85.09
  • 85.09
  • 75.75
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
3.45e3
  • 3.45e3
82.86
  • 82.86
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
3.81e3
  • 3.81e3
81.09
  • 81.09
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
4.10e3
  • 4.10e3
  • 6.29e3
79.66
  • 79.66
  • 68.77
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.25e3
  • 4.25e3
78.89
  • 78.89
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
4.49e3
  • 4.49e3
77.71
  • 77.71
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.77e3
  • 4.77e3
76.30
  • 76.30
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.93e3
  • 4.93e3
  • 5.24e3
75.51
  • 75.51
  • 73.98
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
5.12e3
  • 5.12e3
74.61
  • 74.61
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
5.32e3
  • 5.32e3
73.57
  • 73.57
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
6.24e3
  • 6.24e3
69.01
  • 69.01
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.45e3
  • 7.45e3
  • 8.15e3
63.00
  • 63.00
  • 59.53
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSACAG00000001052.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSACAG00000001052.

Cross-references

EnsemblENSACAG00000001052 (SPTLC1)
HGNCHGNC:11277 (SPTLC1)
Uniprot/SPTREMBLG1K9C4, G1K9C4_ANOCA

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