A. carolinensis Gene: SMC6 - ENSACAG00000001613 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000001613
NameSMC6
Descriptionstructural maintenance of chromosomes 6 [Source:HGNC Symbol;Acc:HGNC:20466]
OrganismAnolis carolinensis (green anole)
Synonym(s)flj22116, smc6l1
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.52e3
  • 1.52e3
  • 5.92e3
92.48
  • 92.48
  • 70.60
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.53e3
  • 1.53e3
92.38
  • 92.38
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
1.84e3
  • 1.84e3
90.88
  • 90.88
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
2.83e3
  • 2.83e3
85.93
  • 85.93
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
4.13e3
  • 4.13e3
79.48
  • 79.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
4.86e3
  • 4.86e3
75.85
  • 75.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
4.91e3
  • 4.91e3
75.65
  • 75.65
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
5.14e3
  • 5.14e3
74.46
  • 74.46
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
5.15e3
  • 5.15e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
5.76e3
  • 5.76e3
71.40
  • 71.40
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
5.86e3
  • 5.86e3
  • 7.65e3
70.90
  • 70.90
  • 62.02
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
5.91e3
  • 5.91e3
70.66
  • 70.66
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.16e3
  • 6.16e3
  • 9.29e3
69.41
  • 69.41
  • 53.87
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.67e3
  • 6.67e3
  • 8.12e3
66.86
  • 66.86
  • 59.69
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
50.07
  • 50.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSACAG00000001613.

Cross-references

EnsemblENSACAG00000001613 (SMC6)
HGNCHGNC:20466 (SMC6)
Uniprot/SPTREMBLG1K9S9, G1K9S9_ANOCA

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