A. carolinensis Gene: LHX1 - ENSACAG00000002508 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000002508
NameLHX1
DescriptionLIM homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6593]
OrganismAnolis carolinensis (green anole)
Synonym(s)lim-1, lim1
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.85e3
  • 5.85e3
  • 9.11e3
70.98
  • 70.98
  • 54.78
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
6.89e3
  • 6.89e3
65.79
  • 65.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
9.60e3
  • 9.60e3
52.36
  • 52.36
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
45.46
  • 45.46
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
40.78
  • 40.78
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
32.42
  • 32.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSACAG00000002508.

Cross-references

EnsemblENSACAG00000002508 (LHX1)
HGNCHGNC:6593 (LHX1)
Uniprot/SPTREMBLH9G6C8, H9G6C8_ANOCA

Do not show this banner again