Gene: RAD54B - ENSACAG00000003671 - Anolis carolinensis (green anole)

General information

Ensembl ID	ENSACAG00000003671
Name	RAD54B
Description	RAD54 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17228]
Organism	Anolis carolinensis (green anole)
Synonym(s)	rdh54
Orthologs(s)	19 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002113	kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	2.61e3 2.61e3	87.07 87.07	AEIR AEIR
UBERON:1000003	dewlap	[+] 1 stage UBERON:0000104life cycle	3.84e3 3.84e3	80.96 80.96	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000104life cycle	4.84e3 4.84e3	75.96 75.96	AEIR AEIR
UBERON:0001134	skeletal muscle tissue	[+] 2 stages UBERON:0000104life cycle UBERON:0000113post-juvenile adult stage	5.18e3 5.18e3 9.19e3	74.29 74.29 54.37	AEIR AEIR AEIR
UBERON:0005417	forelimb bud	[+] 1 stage UBERON:0000068embryo stage	5.25e3 5.25e3	73.95 73.95	AEIR AEIR
UBERON:0007144	embryonic post-anal tail	[+] 1 stage UBERON:0000068embryo stage	5.79e3 5.79e3	71.24 71.24	AEIR AEIR
UBERON:0005418	hindlimb bud	[+] 1 stage UBERON:0000068embryo stage	6.22e3 6.22e3	69.12 69.12	AEIR AEIR
UBERON:0008812	hemipenis	[+] 1 stage UBERON:0000068embryo stage	7.90e3 7.90e3	60.80 60.80	AEIR AEIR
UBERON:0002369	adrenal gland	[+] 1 stage UBERON:0000104life cycle	1.13e4 1.13e4	44.14 44.14	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000104life cycle	1.16e4 1.16e4	42.61 42.61	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	1.19e4 1.19e4 1.46e4	41.11 41.11 27.54	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Sauria	1 species Gallus gallus (chicken)	1 gene ENSGALG00000015955 RAD54B	Compare expression	[+]
Amniota	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken)	17 genes ENSG00000197275 RAD54B ENSMUSG00000078773 Rad54b ENSPTRG00000020427 RAD54B ENSGGOG00000023516 RAD54B ENSMMUG00000005659 RAD54B ENSRNOG00000039949 Rad54b ENSBTAG00000000632 RAD54B ENSSSCG00000006101 RAD54B ENSECAG00000021949 RAD54B ENSOCUG00000016478 RAD54B ENSCAFG00000009179 RAD54B ENSFCAG00000015513 RAD54B ENSCPOG00000011643 RAD54B ENSEEUG00000008056 RAD54B ENSMODG00000007343 RAD54B ENSOANG00000011348 RAD54B ENSGALG00000015955 RAD54B	Compare expression	[+]
Tetrapoda	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000197275 RAD54B ENSMUSG00000078773 Rad54b ENSPTRG00000020427 RAD54B ENSGGOG00000023516 RAD54B ENSMMUG00000005659 RAD54B ENSRNOG00000039949 Rad54b ENSBTAG00000000632 RAD54B ENSSSCG00000006101 RAD54B ENSECAG00000021949 RAD54B ENSOCUG00000016478 RAD54B ENSCAFG00000009179 RAD54B ENSFCAG00000015513 RAD54B ENSCPOG00000011643 RAD54B ENSEEUG00000008056 RAD54B ENSMODG00000007343 RAD54B ENSOANG00000011348 RAD54B ENSGALG00000015955 RAD54B ENSXETG00000025924 rad54b	Compare expression	[+]
Euteleostomi	19 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000197275 RAD54B ENSMUSG00000078773 Rad54b ENSDARG00000092134 rad54b ENSPTRG00000020427 RAD54B ENSGGOG00000023516 RAD54B ENSMMUG00000005659 RAD54B ENSRNOG00000039949 Rad54b ENSBTAG00000000632 RAD54B ENSSSCG00000006101 RAD54B ENSECAG00000021949 RAD54B ENSOCUG00000016478 RAD54B ENSCAFG00000009179 RAD54B ENSFCAG00000015513 RAD54B ENSCPOG00000011643 RAD54B ENSEEUG00000008056 RAD54B ENSMODG00000007343 RAD54B ENSOANG00000011348 RAD54B ENSGALG00000015955 RAD54B ENSXETG00000025924 rad54b	Compare expression	[+]

Orthology information comes from OMA : ENSACAG00000003671.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Opisthokonta	2 genes ENSACAG00000002312 RAD54L ENSACAG00000013554 SMARCAD1	Compare expression	[+]

Paralogy information comes from OMA : ENSACAG00000003671.

Cross-references

Ensembl	ENSACAG00000003671 (RAD54B)
HGNC	HGNC:17228 (RAD54B)
Uniprot/SPTREMBL	G1KC65, G1KC65_ANOCA