A. carolinensis Gene: COL12A1 - ENSACAG00000005078 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000005078
NameCOL12A1
Descriptioncollagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
OrganismAnolis carolinensis (green anole)
Synonym(s)col12a1l
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
2.73e3
  • 2.73e3
86.43
  • 86.43
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.16e3
  • 3.16e3
  • 5.08e3
84.31
  • 84.31
  • 74.76
AEIR
  • AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
3.47e3
  • 3.47e3
82.78
  • 82.78
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
3.84e3
  • 3.84e3
80.92
  • 80.92
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
5.32e3
  • 5.32e3
73.60
  • 73.60
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.45e3
  • 5.45e3
72.95
  • 72.95
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
5.53e3
  • 5.53e3
72.56
  • 72.56
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
7.02e3
  • 7.02e3
65.13
  • 65.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
9.59e3
  • 9.59e3
52.38
  • 52.38
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.06e4
  • 1.06e4
  • 1.09e4
47.47
  • 47.47
  • 46.11
AEIR
  • AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
46.63
  • 46.63
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.36e4
43.23
  • 43.23
  • 32.51
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
  • 1.30e4
35.99
  • 35.99
  • 35.24
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
31.28
  • 31.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSACAG00000005078.

Cross-references

EnsemblENSACAG00000005078 (COL12A1)
HGNCHGNC:2188 (COL12A1)
Uniprot/SPTREMBLG1KDU5, G1KDU5_ANOCA

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