A. carolinensis Gene: SMNDC1 - ENSACAG00000005983 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000005983
NameSMNDC1
Descriptionsurvival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
OrganismAnolis carolinensis (green anole)
Synonym(s)smnr, spf30, tdrd16c

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
144
  • 144
  • 793
99.29
  • 99.29
  • 96.07
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
198
  • 198
99.02
  • 99.02
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
279
  • 279
98.62
  • 98.62
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
413
  • 413
97.96
  • 97.96
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
490
  • 490
97.57
  • 97.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
834
  • 834
95.86
  • 95.86
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.21e3
  • 1.21e3
93.98
  • 93.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.37e3
  • 1.37e3
  • 1.81e3
93.23
  • 93.23
  • 91.02
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.47e3
  • 1.47e3
  • 1.70e3
92.72
  • 92.72
  • 91.58
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
1.65e3
  • 1.65e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.74e3
  • 1.74e3
  • 2.14e3
91.39
  • 91.39
  • 89.37
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.91e3
  • 1.91e3
90.55
  • 90.55
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.55e3
  • 2.55e3
87.32
  • 87.32
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
2.69e3
  • 2.69e3
86.64
  • 86.64
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
3.03e3
  • 3.03e3
84.97
  • 84.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSACAG00000005983 (SMNDC1)
HGNCHGNC:16900 (SMNDC1)
Uniprot/SPTREMBLG1KEV9, G1KEV9_ANOCA

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