A. carolinensis Gene: COL2A1 - ENSACAG00000006064 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000006064
NameCOL2A1
Descriptioncollagen, type II, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2200]
OrganismAnolis carolinensis (green anole)
Synonym(s)aom, sedc, stl1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.79e3
  • 1.79e3
  • 4.50e3
91.12
  • 91.12
  • 77.65
AEIR
  • AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
2.12e3
  • 2.12e3
89.50
  • 89.50
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.35e3
  • 3.35e3
83.38
  • 83.38
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
3.40e3
  • 3.40e3
83.15
  • 83.15
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.17e3
  • 4.17e3
79.28
  • 79.28
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
  • 1.82e4
44.67
  • 44.67
  • 9.85
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.12e4
  • 1.12e4
44.15
  • 44.15
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
41.23
  • 41.23
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.43e4
31.68
  • 31.68
  • 28.81
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.61e4
30.34
  • 30.34
  • 19.87
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
29.68
  • 29.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSACAG00000006064 (COL2A1)
HGNCHGNC:2200 (COL2A1)
Uniprot/SPTREMBLH9GBA6, H9GBA6_ANOCA

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