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Gene: COL2A1 - ENSACAG00000006064
- Anolis carolinensis (green anole)
General information
| Ensembl ID | ENSACAG00000006064 |
|---|---|
| Name | COL2A1 |
| Description | collagen, type II, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2200] |
| Organism | Anolis carolinensis (green anole) |
| Synonym(s) | aom, sedc, stl1 |
| Orthologs(s) | 18 orthologs |
| Paralog(s) | 289 paralogs |
Expression
| Anat. entity ID | Anatomical entity | Developmental stage(s) | Rank score | Expression score | Sources |
|---|---|---|---|---|---|
| UBERON:0000922 | embryo |
| 1.79e3
| 91.12
| AEIR
|
| UBERON:0008812 | hemipenis |
| 2.12e3
| 89.50
| AEIR
|
| UBERON:0005418 | hindlimb bud |
| 3.35e3
| 83.38
| AEIR
|
| UBERON:0007144 | embryonic post-anal tail |
| 3.40e3
| 83.15
| AEIR
|
| UBERON:0005417 | forelimb bud |
| 4.17e3
| 79.28
| AEIR
|
| UBERON:0000955 | brain |
| 1.11e4
| 44.67
| AEIR
|
| UBERON:0000992 | female gonad |
| 1.12e4
| 44.15
| AEIR
|
| UBERON:1000003 | dewlap |
| 1.18e4
| 41.23
| AEIR
|
| UBERON:0001134 | skeletal muscle tissue |
| 1.38e4
| 31.68
| AEIR
|
| UBERON:0000948 | heart |
| 1.40e4
| 30.34
| AEIR
|
| UBERON:0002048 | lung |
| 1.42e4
| 29.68
| AEIR
|
| A | Affymetrix |
|---|---|
| E | EST |
| I | In Situ |
| R | RNA-Seq |
| data |
| no data |
| 3.25e4 | lightgrey: low confidence scores |
|---|---|
| important score variation |
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.
Orthologs
Orthology information comes from OMA : ENSACAG00000006064.
Paralogs (same species)
Paralogy information comes from OMA : ENSACAG00000006064.
Cross-references
| Ensembl | ENSACAG00000006064 (COL2A1) |
|---|---|
| HGNC | HGNC:2200 (COL2A1) |
| Uniprot/SPTREMBL | H9GBA6, H9GBA6_ANOCA |