A. carolinensis Gene: SHMT2 - ENSACAG00000006283 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000006283
NameSHMT2
Descriptionserine hydroxymethyltransferase 2 (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:10852]
OrganismAnolis carolinensis (green anole)
Synonym(s)shmt
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
360
  • 360
98.22
  • 98.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.11e3
  • 1.11e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.40e3
  • 1.40e3
  • 2.12e3
93.07
  • 93.07
  • 89.47
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.55e3
  • 1.55e3
  • 2.65e3
92.30
  • 92.30
  • 86.86
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.54e3
  • 2.54e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
3.57e3
  • 3.57e3
  • 5.65e3
82.25
  • 82.25
  • 71.95
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
4.10e3
  • 4.10e3
79.63
  • 79.63
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
4.12e3
  • 4.12e3
79.57
  • 79.57
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
4.84e3
  • 4.84e3
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
4.89e3
  • 4.89e3
75.71
  • 75.71
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
5.30e3
  • 5.30e3
73.69
  • 73.69
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.98e3
  • 5.98e3
70.31
  • 70.31
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
5.99e3
  • 5.99e3
70.27
  • 70.27
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.15e3
  • 8.15e3
  • 8.70e3
59.53
  • 59.53
  • 56.78
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSACAG00000006283.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSACAG00000006283.

Cross-references

EnsemblENSACAG00000006283 (SHMT2)
HGNCHGNC:10852 (SHMT2)
Uniprot/SPTREMBLH9GB95, H9GB95_ANOCA

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