A. carolinensis Gene: COL5A1 - ENSACAG00000007221 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000007221
NameCOL5A1
Descriptioncollagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
OrganismAnolis carolinensis (green anole)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
2.03e3
  • 2.03e3
89.91
  • 89.91
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
3.90e3
  • 3.90e3
80.65
  • 80.65
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
4.45e3
  • 4.45e3
77.91
  • 77.91
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
5.29e3
  • 5.29e3
73.72
  • 73.72
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
8.80e3
  • 8.80e3
56.30
  • 56.30
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
9.56e3
  • 9.56e3
52.56
  • 52.56
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.72e3
  • 9.72e3
  • 1.07e4
51.72
  • 51.72
  • 47.13
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.77e3
  • 9.77e3
  • 1.16e4
51.51
  • 51.51
  • 42.56
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
40.80
  • 40.80
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
36.27
  • 36.27
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
34.79
  • 34.79
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
  • 1.41e4
33.50
  • 33.50
  • 29.77
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSACAG00000007221 (COL5A1)
HGNCHGNC:2209 (COL5A1)
Uniprot/SPTREMBLH9GD05, H9GD05_ANOCA

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