A. carolinensis Gene: VTA1 - ENSACAG00000008420 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000008420
NameVTA1
Descriptionvesicle (multivesicular body) trafficking 1 [Source:HGNC Symbol;Acc:HGNC:20954]
OrganismAnolis carolinensis (green anole)
Synonym(s)c6orf55, hspc228, my012
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.37e3
  • 1.37e3
93.18
  • 93.18
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
1.95e3
  • 1.95e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.98e3
  • 1.98e3
90.19
  • 90.19
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
2.61e3
  • 2.61e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.62e3
  • 2.62e3
  • 3.38e3
86.98
  • 86.98
  • 83.24
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
2.76e3
  • 2.76e3
86.30
  • 86.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.97e3
  • 2.97e3
  • 3.85e3
85.26
  • 85.26
  • 80.87
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
3.17e3
  • 3.17e3
84.29
  • 84.29
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
3.33e3
  • 3.33e3
83.46
  • 83.46
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
3.36e3
  • 3.36e3
83.31
  • 83.31
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
3.62e3
  • 3.62e3
82.02
  • 82.02
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
3.86e3
  • 3.86e3
80.83
  • 80.83
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.90e3
  • 3.90e3
  • 4.24e3
80.63
  • 80.63
  • 78.97
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
4.29e3
  • 4.29e3
78.72
  • 78.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSACAG00000008420.

Cross-references

EnsemblENSACAG00000008420 (VTA1)
HGNCHGNC:20954 (VTA1)
Uniprot/SPTREMBLG1KHT9, G1KHT9_ANOCA

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