A. carolinensis Gene: SHMT1 - ENSACAG00000009076 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000009076
NameSHMT1
Descriptionserine hydroxymethyltransferase 1 (soluble) [Source:HGNC Symbol;Acc:HGNC:10850]
OrganismAnolis carolinensis (green anole)
Synonym(s)cshmt, mgc15229, mgc24556, shmt

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
173
  • 173
99.15
  • 99.15
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
570
  • 570
97.17
  • 97.17
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.26e3
  • 4.26e3
  • 5.38e3
78.83
  • 78.83
  • 73.29
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.79e3
  • 4.79e3
  • 1.43e4
76.20
  • 76.20
  • 28.83
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.16e3
  • 6.16e3
  • 8.64e3
69.44
  • 69.44
  • 57.11
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.49e3
  • 8.49e3
57.84
  • 57.84
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.88e3
  • 8.88e3
  • 1.22e4
55.94
  • 55.94
  • 39.27
AEIR
  • AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
9.03e3
  • 9.03e3
55.19
  • 55.19
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
9.05e3
  • 9.05e3
55.07
  • 55.07
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
9.11e3
  • 9.11e3
54.76
  • 54.76
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.04e4
  • 1.04e4
48.23
  • 48.23
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
47.89
  • 47.89
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
46.89
  • 46.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
46.44
  • 46.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSACAG00000009076 (SHMT1)
HGNCHGNC:10850 (SHMT1)
Uniprot/SPTREMBLH9GEV2, H9GEV2_ANOCA

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