Gene: SDC1 - ENSACAG00000010489 - Anolis carolinensis (green anole)

General information

Ensembl ID	ENSACAG00000010489
Name	SDC1
Description	syndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
Organism	Anolis carolinensis (green anole)
Synonym(s)	cd138, sdc, synd1, syndecan
Orthologs(s)	1 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0007144	embryonic post-anal tail	[+] 1 stage UBERON:0000068embryo stage	337 337	98.33 98.33	AEIR AEIR
UBERON:0005417	forelimb bud	[+] 1 stage UBERON:0000068embryo stage	434 434	97.85 97.85	AEIR AEIR
UBERON:0008812	hemipenis	[+] 1 stage UBERON:0000068embryo stage	441 441	97.81 97.81	AEIR AEIR
UBERON:0005418	hindlimb bud	[+] 1 stage UBERON:0000068embryo stage	558 558	97.23 97.23	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000104life cycle	1.03e3 1.03e3	94.90 94.90	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000104life cycle	1.50e3 1.50e3	92.54 92.54	AEIR AEIR
UBERON:1000003	dewlap	[+] 1 stage UBERON:0000104life cycle	1.59e3 1.59e3	92.11 92.11	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	3.15e3 3.15e3	84.38 84.38	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000104life cycle UBERON:0000113post-juvenile adult stage	4.04e3 4.04e3 7.44e3	79.97 79.97 63.06	AEIR AEIR AEIR
UBERON:0002048	lung	[+] 1 stage UBERON:0000104life cycle	4.58e3 4.58e3	77.28 77.28	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000113post-juvenile adult stage	5.78e3 5.78e3	71.29 71.29	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	7.40e3 7.40e3 8.75e3	63.27 63.27 56.58	AEIR AEIR AEIR
UBERON:0001134	skeletal muscle tissue	[+] 2 stages UBERON:0000104life cycle UBERON:0000113post-juvenile adult stage	1.05e4 1.05e4 1.06e4	47.79 47.79 47.59	AEIR AEIR AEIR
UBERON:0002369	adrenal gland	[+] 1 stage UBERON:0000104life cycle	1.13e4 1.13e4	43.82 43.82	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Sauria	1 species Gallus gallus (chicken)	1 gene ENSGALG00000016480 SDC1	Compare expression	[+]

Orthology information comes from OMA : ENSACAG00000010489.

Cross-references

Ensembl	ENSACAG00000010489 (SDC1)
HGNC	HGNC:10658 (SDC1)
Uniprot/SPTREMBL	G1KK50, G1KK50_ANOCA