Gene: COL4A6 - ENSACAG00000012181 - Anolis carolinensis (green anole)

General information

Ensembl ID	ENSACAG00000012181
Name	COL4A6
Description	collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Organism	Anolis carolinensis (green anole)
Orthologs(s)	16 orthologs
Paralog(s)	289 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000948	heart	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	4.39e3 4.39e3 5.49e3	78.19 78.19 72.75	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 2 stages UBERON:0000104life cycle UBERON:0000068embryo stage	4.39e3 4.39e3 1.38e4	78.19 78.19 31.46	AEIR AEIR AEIR
UBERON:0007144	embryonic post-anal tail	[+] 1 stage UBERON:0000068embryo stage	4.73e3 4.73e3	76.50 76.50	AEIR AEIR
UBERON:0005417	forelimb bud	[+] 1 stage UBERON:0000068embryo stage	5.66e3 5.66e3	71.92 71.92	AEIR AEIR
UBERON:0005418	hindlimb bud	[+] 1 stage UBERON:0000068embryo stage	6.03e3 6.03e3	70.05 70.05	AEIR AEIR
UBERON:0008812	hemipenis	[+] 1 stage UBERON:0000068embryo stage	6.49e3 6.49e3	67.78 67.78	AEIR AEIR
UBERON:0001134	skeletal muscle tissue	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	7.14e3 7.14e3 9.74e3	64.57 64.57 51.65	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000104life cycle	8.45e3 8.45e3	58.04 58.04	AEIR AEIR
UBERON:1000003	dewlap	[+] 1 stage UBERON:0000104life cycle	8.76e3 8.76e3	56.53 56.53	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	8.76e3 8.76e3	56.51 56.51	AEIR AEIR
UBERON:0002048	lung	[+] 1 stage UBERON:0000104life cycle	9.12e3 9.12e3	54.72 54.72	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000104life cycle	1.03e4 1.03e4	48.80 48.80	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	1.42e4 1.42e4 1.51e4	29.36 29.36 25.09	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Sauria	1 species Gallus gallus (chicken)	1 gene ENSGALG00000008266 COL4A6	Compare expression	[+]
Amniota	15 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken)	15 genes ENSG00000197565 COL4A6 ENSMUSG00000031273 Col4a6 ENSPTRG00000022171 COL4A6 ENSGGOG00000002973 COL4A6 ENSMMUG00000007205 COL4A6 ENSRNOG00000056772 Col4a6 ENSBTAG00000013760 COL4A6 ENSECAG00000021274 COL4A6 ENSOCUG00000010845 COL4A6 ENSCAFG00000018016 COL4A6 ENSFCAG00000005189 COL4A6 ENSCPOG00000015073 COL4A6 ENSEEUG00000003979 COL4A6 ENSOANG00000001272 ENSGALG00000008266 COL4A6	Compare expression	[+]
Tetrapoda	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000197565 COL4A6 ENSMUSG00000031273 Col4a6 ENSPTRG00000022171 COL4A6 ENSGGOG00000002973 COL4A6 ENSMMUG00000007205 COL4A6 ENSRNOG00000056772 Col4a6 ENSBTAG00000013760 COL4A6 ENSECAG00000021274 COL4A6 ENSOCUG00000010845 COL4A6 ENSCAFG00000018016 COL4A6 ENSFCAG00000005189 COL4A6 ENSCPOG00000015073 COL4A6 ENSEEUG00000003979 COL4A6 ENSOANG00000001272 ENSGALG00000008266 COL4A6 ENSXETG00000001547 col4a6	Compare expression	[+]

Orthology information comes from OMA : ENSACAG00000012181.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Eukaryota	289 genes ENSACAG00000000169 MOK ENSACAG00000000173 DDX25 ENSACAG00000000296 ENSACAG00000000441 CIRBP ENSACAG00000000539 ENSACAG00000000685 ENSACAG00000000843 ENSACAG00000000972 TTC9C ENSACAG00000000979 WASL ENSACAG00000001101 SSC4D ENSACAG00000001253 RBM34 ENSACAG00000001332 ENKD1 ENSACAG00000001360 CDC16 ENSACAG00000001402 MAPK1 ENSACAG00000001437 DDX46 ENSACAG00000001452 TPR ENSACAG00000001536 ENSACAG00000001547 CCNL1 ENSACAG00000001573 TAF11 ENSACAG00000001586 LUC7L3 ENSACAG00000001606 ENSACAG00000001806 MAPK11 ENSACAG00000001810 CDKL1 ENSACAG00000001832 DNAJC3 ENSACAG00000001909 PPP1R7 ENSACAG00000001919 MAPK12 ENSACAG00000001968 PAK1 ENSACAG00000002045 ENSACAG00000002059 SGTA ENSACAG00000002061 SRSF6 ENSACAG00000002114 CELF1 ENSACAG00000002125 KIF6 ENSACAG00000002222 DAAM2 ENSACAG00000002375 SARAF ENSACAG00000002481 WDR62 ENSACAG00000002494 CSNK1D ENSACAG00000002517 CLK2 ENSACAG00000002522 WIPF2 ENSACAG00000002544 ENSACAG00000002573 MRM1 ENSACAG00000002614 MEGF10 ENSACAG00000002674 CASC3 ENSACAG00000002933 MORN4 ENSACAG00000002948 RSPH1 ENSACAG00000003031 CDK8 ENSACAG00000003155 WDR37 ENSACAG00000003202 gsk3a ENSACAG00000003216 GTF3A ENSACAG00000003229 CFAP45 ENSACAG00000003329 ITGBL1 ENSACAG00000003428 HOOK2 ENSACAG00000003455 ENSACAG00000003492 PDPK1 ENSACAG00000003528 SASS6 ENSACAG00000003543 GNB2 ENSACAG00000003600 ENSACAG00000003633 COL8A2 ENSACAG00000003655 GSK3B ENSACAG00000003772 WDR83 ENSACAG00000003898 DYRK2 ENSACAG00000003918 FXR1 ENSACAG00000003944 ENSACAG00000003994 DDX42 ENSACAG00000004063 CCDC39 ENSACAG00000004088 RNPS1 ENSACAG00000004206 ENSACAG00000004251 PAK1IP1 ENSACAG00000004327 PDS5B ENSACAG00000004330 DNAJC9 ENSACAG00000004423 ENSACAG00000004488 ENSACAG00000004527 ELAVL4 ENSACAG00000004565 ENSACAG00000004603 DIAPH3 ENSACAG00000004667 GNB4 ENSACAG00000004683 COL9A2 ENSACAG00000004763 MFAP1 ENSACAG00000004832 ENSACAG00000005065 RBM19 ENSACAG00000005084 COL1A1 ENSACAG00000005143 SRSF5 ENSACAG00000005213 COL9A3 ENSACAG00000005227 ENSACAG00000005242 GNB1 ENSACAG00000005288 NOP14 ENSACAG00000005327 SRSF10 ENSACAG00000005366 DAZAP1 ENSACAG00000005401 RIPK4 ENSACAG00000005402 WIPF1 ENSACAG00000005403 KIF9 ENSACAG00000005404 CDK2 ENSACAG00000005518 CIR1 ENSACAG00000005732 HOOK3 ENSACAG00000005778 DDX41 ENSACAG00000005792 GNB3 ENSACAG00000005963 WDR61 ENSACAG00000005976 ATG16L1 ENSACAG00000006064 COL2A1 ENSACAG00000006082 SRSF7 ENSACAG00000006293 CCDC146 ENSACAG00000006303 WAS ENSACAG00000006440 ENSACAG00000006640 NFXL1 ENSACAG00000006771 PRKAA2 ENSACAG00000006810 KIF20A ENSACAG00000006836 BBS4 ENSACAG00000006912 SRRM2 ENSACAG00000006921 TTC16 ENSACAG00000007111 HOOK1 ENSACAG00000007127 SRPK2 ENSACAG00000007169 ENSACAG00000007251 AMFR ENSACAG00000007383 LIMK1 ENSACAG00000007575 CFDP1 ENSACAG00000007645 ENSACAG00000007661 CELF2 ENSACAG00000007799 DYRK3 ENSACAG00000007823 CDK20 ENSACAG00000007841 ENSACAG00000007879 TLN2 ENSACAG00000007899 FMR1 ENSACAG00000008012 CCDC112 ENSACAG00000008132 ALG6 ENSACAG00000008158 DDX17 ENSACAG00000008210 WDR3 ENSACAG00000008264 CSNK1E ENSACAG00000008278 CCDC65 ENSACAG00000008280 SRPK3 ENSACAG00000008545 DDX24 ENSACAG00000008547 ENSACAG00000008601 KIF3B ENSACAG00000008611 CTR9 ENSACAG00000008819 RBMX2 ENSACAG00000008932 ENSACAG00000008940 FMNL3 ENSACAG00000009074 PRPF40B ENSACAG00000009290 RP9 ENSACAG00000009334 PLK2 ENSACAG00000009379 PIGU ENSACAG00000009455 NCOA6 ENSACAG00000009465 DCAF13 ENSACAG00000009706 GAS8 ENSACAG00000009755 DDX28 ENSACAG00000009829 DDX21 ENSACAG00000009864 ZNF207 ENSACAG00000009878 RPS6KA5 ENSACAG00000010031 GAR1 ENSACAG00000010060 SYVN1 ENSACAG00000010215 LRRC45 ENSACAG00000010236 PRKAA1 ENSACAG00000010556 FIP1L1 ENSACAG00000010583 WDR1 ENSACAG00000010739 ENSACAG00000010740 LRRC74B ENSACAG00000010756 DDX39A ENSACAG00000010866 KCTD9 ENSACAG00000010939 ENSACAG00000010946 CWF19L2 ENSACAG00000011004 CDK19 ENSACAG00000011086 CDK1 ENSACAG00000011134 NECAP1 ENSACAG00000011361 MAPK8 ENSACAG00000011372 PDS5A ENSACAG00000011478 TXLNG ENSACAG00000011490 RRP9 ENSACAG00000011794 RBBP6 ENSACAG00000011795 MAPK10 ENSACAG00000011841 PABPC1L ENSACAG00000011905 POC1B ENSACAG00000011941 ENSACAG00000011971 DIAPH1 ENSACAG00000012078 PLK1 ENSACAG00000012130 GRN ENSACAG00000012234 HNRNPA3 ENSACAG00000012240 DDX39B ENSACAG00000012261 ENSACAG00000012343 STK38L ENSACAG00000012428 CELF4 ENSACAG00000012611 RNF165 ENSACAG00000012719 FMNL2 ENSACAG00000012726 ENSACAG00000012793 KIF3A ENSACAG00000012897 PRPF40A ENSACAG00000012992 HNRNPA2B1 ENSACAG00000013010 ENSACAG00000013066 DNAAF1 ENSACAG00000013219 CDK4 ENSACAG00000013250 PABPN1L ENSACAG00000013301 COL1A2 ENSACAG00000013339 CDC20 ENSACAG00000013382 STK16 ENSACAG00000013442 TBL1XR1 ENSACAG00000013446 ENSACAG00000013447 CCDC22 ENSACAG00000013498 DIAPH2 ENSACAG00000013512 ENSACAG00000013666 FBXL2 ENSACAG00000013718 RBM3 ENSACAG00000013727 MLST8 ENSACAG00000013735 NUPL2 ENSACAG00000013810 LRRC40 ENSACAG00000013986 STK11 ENSACAG00000014055 COL4A2 ENSACAG00000014088 NUP98 ENSACAG00000014113 DRC1 ENSACAG00000014143 ENSACAG00000014151 MNS1 ENSACAG00000014162 NUP62CL ENSACAG00000014482 NEK7 ENSACAG00000014687 OGT ENSACAG00000014738 COL5A2 ENSACAG00000014741 SMC1B ENSACAG00000014780 DAW1 ENSACAG00000014881 ENSACAG00000015056 MAPK3 ENSACAG00000015062 COL3A1 ENSACAG00000015244 TMF1 ENSACAG00000015273 CDK6 ENSACAG00000015284 VRK3 ENSACAG00000015296 DDX55 ENSACAG00000015344 RPS6KA2 ENSACAG00000015475 ENSACAG00000015556 PLK3 ENSACAG00000015587 RPS6KA4 ENSACAG00000015659 ENSACAG00000015703 PLRG1 ENSACAG00000015725 LRRC34 ENSACAG00000015728 LRRC57 ENSACAG00000015750 LRRIQ4 ENSACAG00000015873 SGTB ENSACAG00000015933 TPCN2 ENSACAG00000015966 KRI1 ENSACAG00000015968 AURKA ENSACAG00000015977 RNMTL1 ENSACAG00000016048 DNAL1 ENSACAG00000016085 CNOT3 ENSACAG00000016263 PAK2 ENSACAG00000016319 NEK2 ENSACAG00000016443 PPP1R42 ENSACAG00000016452 CDK7 ENSACAG00000016470 ENSACAG00000016476 PPID ENSACAG00000016483 ENSACAG00000016489 FMNL1 ENSACAG00000016599 RPS6KA1 ENSACAG00000016606 STK38 ENSACAG00000016646 ENSACAG00000016677 MAPK9 ENSACAG00000016756 CLK4 ENSACAG00000016905 ABL1 ENSACAG00000016916 MAPK13 ENSACAG00000016918 PEX7 ENSACAG00000016938 DNAJC7 ENSACAG00000016958 ELAVL3 ENSACAG00000016959 CELF5 ENSACAG00000016964 CLK1 ENSACAG00000016966 MAPK14 ENSACAG00000017021 SRPK1 ENSACAG00000017109 HNRNPA0 ENSACAG00000017134 DDX6 ENSACAG00000017200 CDK10 ENSACAG00000017505 FBXL20 ENSACAG00000017521 ELAVL2 ENSACAG00000017545 ENSACAG00000017650 PRPF4B ENSACAG00000017700 FAM184A ENSACAG00000017861 ENSACAG00000017928 ENSACAG00000020981 LRRTM4 ENSACAG00000022075 ENSACAG00000022366 ENSACAG00000022512 ENSACAG00000023123 ENSACAG00000023208 RRP36 ENSACAG00000023931 ENSACAG00000024289 ENSACAG00000024417 DMP1 ENSACAG00000024964 ENSACAG00000025283 PRDM16 ENSACAG00000025499 FKBPL ENSACAG00000025568 ENSACAG00000025778 ENSACAG00000026332 ENSACAG00000026772 FBXL14 ENSACAG00000026926 ENSACAG00000027366 ENSACAG00000027550 ENSACAG00000027622 ENSACAG00000027880	Compare expression	[+]

Paralogy information comes from OMA : ENSACAG00000012181.

Cross-references

Ensembl	ENSACAG00000012181 (COL4A6)
HGNC	HGNC:2208 (COL4A6)
Uniprot/SPTREMBL	H9GIR1, H9GIR1_ANOCA