Gene: HCFC1 - ENSACAG00000012364 - Anolis carolinensis (green anole)

General information

Ensembl ID	ENSACAG00000012364
Name	HCFC1
Description	host cell factor C1 [Source:HGNC Symbol;Acc:HGNC:4839]
Organism	Anolis carolinensis (green anole)
Synonym(s)	cff, hcf-1, hcf1, hfc1, mgc70925, mrx3, ppp1r89, vcaf
Orthologs(s)	19 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0007144	embryonic post-anal tail	[+] 1 stage UBERON:0000068embryo stage	413 413	97.96 97.96	AEIR AEIR
UBERON:0008812	hemipenis	[+] 1 stage UBERON:0000068embryo stage	471 471	97.67 97.67	AEIR AEIR
UBERON:0005418	hindlimb bud	[+] 1 stage UBERON:0000068embryo stage	528 528	97.38 97.38	AEIR AEIR
UBERON:0005417	forelimb bud	[+] 1 stage UBERON:0000068embryo stage	789 789	96.09 96.09	AEIR AEIR
UBERON:0001134	skeletal muscle tissue	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	2.14e3 2.14e3 5.62e3	89.38 89.38 72.11	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	2.55e3 2.55e3 2.70e3	87.32 87.32 86.61	AEIR AEIR AEIR
UBERON:0002048	lung	[+] 1 stage UBERON:0000104life cycle	2.61e3 2.61e3	87.03 87.03	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	2.83e3 2.83e3	85.98 85.98	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000104life cycle	4.18e3 4.18e3	79.27 79.27	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000113post-juvenile adult stage UBERON:0000104life cycle	4.60e3 4.60e3 6.76e3	77.18 77.18 66.44	AEIR AEIR AEIR
UBERON:1000003	dewlap	[+] 1 stage UBERON:0000104life cycle	6.20e3 6.20e3	69.24 69.24	AEIR AEIR
UBERON:0002369	adrenal gland	[+] 1 stage UBERON:0000104life cycle	7.84e3 7.84e3	61.08 61.08	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000104life cycle	8.17e3 8.17e3	59.46 59.46	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000113post-juvenile adult stage	9.46e3 9.46e3	53.04 53.04	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Amniota	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus)	16 genes ENSG00000172534 HCFC1 ENSMUSG00000031386 Hcfc1 ENSPTRG00000022421 HCFC1 ENSGGOG00000009800 HCFC1 ENSMMUG00000000319 HCFC1 ENSRNOG00000051948 Hcfc1 ENSBTAG00000011904 HCFC1 ENSSSCG00000012793 HCFC1 ENSECAG00000022440 HCFC1 ENSOCUG00000001113 HCFC1 ENSCAFG00000019428 HCFC1 ENSFCAG00000011387 HCFC1 ENSCPOG00000014203 HCFC1 ENSEEUG00000008074 HCFC1 ENSMODG00000011597 HCFC1 ENSOANG00000005871 HCFC1	Compare expression	[+]
Tetrapoda	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000172534 HCFC1 ENSMUSG00000031386 Hcfc1 ENSPTRG00000022421 HCFC1 ENSGGOG00000009800 HCFC1 ENSMMUG00000000319 HCFC1 ENSRNOG00000051948 Hcfc1 ENSBTAG00000011904 HCFC1 ENSSSCG00000012793 HCFC1 ENSECAG00000022440 HCFC1 ENSOCUG00000001113 HCFC1 ENSCAFG00000019428 HCFC1 ENSFCAG00000011387 HCFC1 ENSCPOG00000014203 HCFC1 ENSEEUG00000008074 HCFC1 ENSMODG00000011597 HCFC1 ENSOANG00000005871 HCFC1 ENSXETG00000014251 hcfc1	Compare expression	[+]
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000172534 HCFC1 ENSMUSG00000031386 Hcfc1 ENSDARG00000012519 hcfc1b ENSDARG00000015990 hcfc1a ENSPTRG00000022421 HCFC1 ENSGGOG00000009800 HCFC1 ENSMMUG00000000319 HCFC1 ENSRNOG00000051948 Hcfc1 ENSBTAG00000011904 HCFC1 ENSSSCG00000012793 HCFC1 ENSECAG00000022440 HCFC1 ENSOCUG00000001113 HCFC1 ENSCAFG00000019428 HCFC1 ENSFCAG00000011387 HCFC1 ENSCPOG00000014203 HCFC1 ENSEEUG00000008074 HCFC1 ENSMODG00000011597 HCFC1 ENSOANG00000005871 HCFC1 ENSXETG00000014251 hcfc1	Compare expression	[+]

Orthology information comes from OMA : ENSACAG00000012364.

Cross-references

Ensembl	ENSACAG00000012364 (HCFC1)
HGNC	HGNC:4839 (HCFC1)
Uniprot/SPTREMBL	G1KMB6, G1KMB6_ANOCA