A. carolinensis Gene: PCDHAC1 - ENSACAG00000012489 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000012489
NamePCDHAC1
Descriptionprotocadherin alpha subfamily C, 1 [Source:HGNC Symbol;Acc:HGNC:8676]
OrganismAnolis carolinensis (green anole)
Orthologs(s)3 orthologs
Paralog(s)69 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.94e3
  • 1.94e3
  • 7.55e3
90.36
  • 90.36
  • 62.54
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
3.03e3
  • 3.03e3
84.98
  • 84.98
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
1.12e4
  • 1.12e4
44.53
  • 44.53
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
42.32
  • 42.32
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
39.77
  • 39.77
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
1.24e4
  • 1.24e4
38.54
  • 38.54
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
37.58
  • 37.58
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
  • 1.29e4
36.49
  • 36.49
  • 36.15
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
32.22
  • 32.22
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
30.38
  • 30.38
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
  • 1.50e4
29.83
  • 29.83
  • 25.55
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Amniota3 species3 genesCompare expression

Orthology information comes from OMA : ENSACAG00000012489.

Paralogs (same species)

Cross-references

EnsemblENSACAG00000012489 (PCDHAC1)
HGNCHGNC:8676 (PCDHAC1)
Uniprot/SPTREMBLG1KMP7, G1KMP7_ANOCA

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