A. carolinensis Gene: PTCH1 - ENSACAG00000012983 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000012983
NamePTCH1
Descriptionpatched 1 [Source:HGNC Symbol;Acc:HGNC:9585]
OrganismAnolis carolinensis (green anole)
Synonym(s)bcns, nbccs, ptch
Orthologs(s)23 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.50e3
  • 1.50e3
  • 3.51e3
92.57
  • 92.57
  • 82.56
AEIR
  • AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
1.52e3
  • 1.52e3
92.44
  • 92.44
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.22e3
  • 2.22e3
88.98
  • 88.98
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
2.26e3
  • 2.26e3
88.77
  • 88.77
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.38e3
  • 2.38e3
88.18
  • 88.18
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.08e3
  • 7.08e3
  • 7.16e3
64.84
  • 64.84
  • 64.43
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
7.76e3
  • 7.76e3
61.47
  • 61.47
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.88e3
  • 8.88e3
  • 1.22e4
55.92
  • 55.92
  • 39.42
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
9.22e3
  • 9.22e3
54.21
  • 54.21
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
  • 1.23e4
41.22
  • 41.22
  • 38.72
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
40.61
  • 40.61
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.22e4
  • 1.22e4
39.55
  • 39.55
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
38.79
  • 38.79
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
35.60
  • 35.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria22 species23 genesCompare expression

Orthology information comes from OMA : ENSACAG00000012983.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSACAG00000012983.

Cross-references

EnsemblENSACAG00000012983 (PTCH1)
HGNCHGNC:9585 (PTCH1)
Uniprot/SPTREMBLG1KNA3, G1KNA3_ANOCA

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