A. carolinensis Gene: LINC00116 - ENSACAG00000013106 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000013106
NameLINC00116
Descriptionlong intergenic non-protein coding RNA 116 [Source:HGNC Symbol;Acc:HGNC:27339]
OrganismAnolis carolinensis (green anole)
Synonym(s)ncrna00116
Orthologs(s)6 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000104life cycle
20.0
  • 20.0
99.91
  • 99.91
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
44.0
  • 44.0
99.79
  • 99.79
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
309
  • 309
98.47
  • 98.47
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
343
  • 343
  • 383
98.30
  • 98.30
  • 98.10
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
353
  • 353
98.25
  • 98.25
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
451
  • 451
97.77
  • 97.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
466
  • 466
  • 3.57e3
97.69
  • 97.69
  • 82.28
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
695
  • 695
  • 1.19e3
96.55
  • 96.55
  • 94.09
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
1.42e3
  • 1.42e3
92.95
  • 92.95
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.76e3
  • 1.76e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
4.50e3
  • 4.50e3
77.65
  • 77.65
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
5.67e3
  • 5.67e3
71.83
  • 71.83
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.27e4
  • 1.27e4
36.77
  • 36.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Amniota6 species6 genesCompare expression

Orthology information comes from OMA : ENSACAG00000013106.

Cross-references

EnsemblENSACAG00000013106 (LINC00116)
HGNCHGNC:27339 (LINC00116)
Uniprot/SPTREMBLH9GJK6, H9GJK6_ANOCA

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