A. carolinensis Gene: HMGB3 - ENSACAG00000013274 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000013274
NameHMGB3
Descriptionhigh mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]
OrganismAnolis carolinensis (green anole)
Synonym(s)hmg2a, hmg4, mgc90319
Orthologs(s)21 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
73.7
  • 73.7
  • 112
99.64
  • 99.64
  • 99.45
AEIR
  • AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
127
  • 127
99.37
  • 99.37
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
156
  • 156
99.23
  • 99.23
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
164
  • 164
99.19
  • 99.19
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
165
  • 165
99.19
  • 99.19
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
205
  • 205
  • 863
98.99
  • 98.99
  • 95.72
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
220
  • 220
  • 236
98.91
  • 98.91
  • 98.83
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
259
  • 259
  • 462
98.72
  • 98.72
  • 97.71
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
275
  • 275
98.64
  • 98.64
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
363
  • 363
98.20
  • 98.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
412
  • 412
97.96
  • 97.96
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
450
  • 450
97.77
  • 97.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
454
  • 454
97.75
  • 97.75
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
459
  • 459
97.73
  • 97.73
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
533
  • 533
97.36
  • 97.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota15 species17 genesCompare expression
Tetrapoda16 species18 genesCompare expression
Euteleostomi17 species20 genesCompare expression
Bilateria18 species21 genesCompare expression

Orthology information comes from OMA : ENSACAG00000013274.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSACAG00000013274.

Cross-references

EnsemblENSACAG00000013274 (HMGB3)
HGNCHGNC:5004 (HMGB3)
Uniprot/SPTREMBLH9GJU1, H9GJU1_ANOCA

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