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A. carolinensis Gene: VDR - ENSACAG00000013485 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000013485
NameVDR
Descriptionvitamin D (1,25- dihydroxyvitamin D3) receptor [Source:HGNC Symbol;Acc:HGNC:12679]
OrganismAnolis carolinensis (green anole)
Synonym(s)nr1i1, ppp1r163
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.88e3
  • 2.88e3
85.69
  • 85.69
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.43e3
  • 3.43e3
  • 3.56e3
82.96
  • 82.96
  • 82.34
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
5.82e3
  • 5.82e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
5.88e3
  • 5.88e3
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
6.47e3
  • 6.47e3
67.88
  • 67.88
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.96e3
  • 7.96e3
  • 8.16e3
60.47
  • 60.47
  • 59.48
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
7.98e3
  • 7.98e3
60.40
  • 60.40
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.53e3
  • 9.53e3
52.68
  • 52.68
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.01e4
  • 1.01e4
  • 1.09e4
49.91
  • 49.91
  • 45.95
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.01e4
  • 1.01e4
49.85
  • 49.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
49.45
  • 49.45
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
1.14e4
  • 1.14e4
43.47
  • 43.47
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.20e4
  • 1.20e4
40.54
  • 40.54
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
39.21
  • 39.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSACAG00000013485.

Cross-references

EnsemblENSACAG00000013485 (VDR)
HGNCHGNC:12679 (VDR)
Uniprot/SPTREMBLG1KNX9, G1KNX9_ANOCA

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