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A. carolinensis Gene: LSM3 - ENSACAG00000013503 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000013503
NameLSM3
DescriptionLSM3 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17874]
OrganismAnolis carolinensis (green anole)
Synonym(s)smx4, uss2, ylr438c
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
41.9
  • 41.9
  • 131
99.80
  • 99.80
  • 99.35
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
105
  • 105
99.48
  • 99.48
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
119
  • 119
99.41
  • 99.41
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
159
  • 159
99.22
  • 99.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
203
  • 203
99.00
  • 99.00
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
231
  • 231
  • 376
98.86
  • 98.86
  • 98.14
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
333
  • 333
98.35
  • 98.35
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
379
  • 379
  • 2.07e3
98.12
  • 98.12
  • 89.70
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
437
  • 437
  • 1.21e3
97.84
  • 97.84
  • 94.02
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
576
  • 576
97.14
  • 97.14
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
945
  • 945
95.31
  • 95.31
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.05e3
  • 1.05e3
94.77
  • 94.77
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
1.18e3
  • 1.18e3
94.12
  • 94.12
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.57e3
  • 1.57e3
92.23
  • 92.23
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
2.12e3
  • 2.12e3
89.49
  • 89.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Amniota16 species17 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria20 species21 genesCompare expression

Orthology information comes from OMA : ENSACAG00000013503.

Cross-references

EnsemblENSACAG00000013503 (LSM3)
HGNCHGNC:17874 (LSM3)
Uniprot/SPTREMBLG1KNV8, G1KNV8_ANOCA

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