A. carolinensis Gene: ABCA1 - ENSACAG00000014282 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000014282
NameABCA1
DescriptionATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29]
OrganismAnolis carolinensis (green anole)
Synonym(s)abc1, hdldt1, tgd
Orthologs(s)21 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
5.33e3
  • 5.33e3
73.56
  • 73.56
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
5.69e3
  • 5.69e3
  • 1.07e4
71.78
  • 71.78
  • 47.06
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
5.85e3
  • 5.85e3
70.96
  • 70.96
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
6.08e3
  • 6.08e3
69.82
  • 69.82
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
7.24e3
  • 7.24e3
64.04
  • 64.04
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.34e3
  • 7.34e3
63.55
  • 63.55
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.38e3
  • 7.38e3
63.36
  • 63.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
7.84e3
  • 7.84e3
61.09
  • 61.09
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.66e3
  • 8.66e3
  • 9.02e3
57.00
  • 57.00
  • 55.23
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.77e3
  • 8.77e3
  • 1.02e4
56.44
  • 56.44
  • 49.21
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
9.90e3
  • 9.90e3
50.83
  • 50.83
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
45.94
  • 45.94
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
45.63
  • 45.63
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
34.89
  • 34.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species20 genesCompare expression
Bilateria20 species21 genesCompare expression

Orthology information comes from OMA : ENSACAG00000014282.

Paralogs (same species)

Paralogy information comes from OMA : ENSACAG00000014282.

Cross-references

EnsemblENSACAG00000014282 (ABCA1)
HGNCHGNC:29 (ABCA1)
Uniprot/SPTREMBLG1KQ95, G1KQ95_ANOCA

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