A. carolinensis Gene: PCDH1 - ENSACAG00000014355 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000014355
NamePCDH1
Descriptionprotocadherin 1 [Source:HGNC Symbol;Acc:HGNC:8655]
OrganismAnolis carolinensis (green anole)
Synonym(s)pc42
Orthologs(s)18 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
4.22e3
  • 4.22e3
79.06
  • 79.06
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
4.94e3
  • 4.94e3
75.50
  • 75.50
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
5.28e3
  • 5.28e3
73.78
  • 73.78
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.77e3
  • 5.77e3
  • 5.86e3
71.36
  • 71.36
  • 70.92
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
6.26e3
  • 6.26e3
68.94
  • 68.94
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.34e3
  • 8.34e3
58.58
  • 58.58
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.21e3
  • 9.21e3
  • 1.34e4
54.27
  • 54.27
  • 33.55
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.48e3
  • 9.48e3
52.95
  • 52.95
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
49.00
  • 49.00
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
47.81
  • 47.81
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
47.65
  • 47.65
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
47.08
  • 47.08
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
  • 1.32e4
44.90
  • 44.90
  • 34.42
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSACAG00000014355.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia2 genesCompare expression

Paralogy information comes from OMA : ENSACAG00000014355.

Cross-references

EnsemblENSACAG00000014355 (PCDH1)
HGNCHGNC:8655 (PCDH1)
Uniprot/SPTREMBLG1KPT0, G1KPT0_ANOCA

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