A. carolinensis Gene: SMCO4 - ENSACAG00000014597 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000014597
NameSMCO4
Descriptionsingle-pass membrane protein with coiled-coil domains 4 [Source:HGNC Symbol;Acc:HGNC:24810]
OrganismAnolis carolinensis (green anole)
Synonym(s)c11orf75, fn5
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
135
  • 135
99.33
  • 99.33
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
159
  • 159
99.22
  • 99.22
AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
244
  • 244
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
246
  • 246
  • 332
98.78
  • 98.78
  • 98.36
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
253
  • 253
98.75
  • 98.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
267
  • 267
98.68
  • 98.68
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
268
  • 268
  • 1.73e3
98.67
  • 98.67
  • 91.42
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
486
  • 486
  • 855
97.59
  • 97.59
  • 95.76
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
807
  • 807
96.00
  • 96.00
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.28e3
  • 1.28e3
93.67
  • 93.67
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.64e3
  • 1.64e3
  • 6.13e3
91.86
  • 91.86
  • 69.55
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.22e3
  • 2.22e3
89.00
  • 89.00
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
2.28e3
  • 2.28e3
88.70
  • 88.70
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
2.98e3
  • 2.98e3
85.18
  • 85.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
9.49e3
  • 9.49e3
52.90
  • 52.90
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota10 species12 genesCompare expression
Tetrapoda11 species13 genesCompare expression
Euteleostomi12 species14 genesCompare expression
Bilateria18 species20 genesCompare expression

Orthology information comes from OMA : ENSACAG00000014597.

Cross-references

EnsemblENSACAG00000014597 (SMCO4)
HGNCHGNC:24810 (SMCO4)
Uniprot/SPTREMBLG1KQ16, G1KQ16_ANOCA

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