A. carolinensis Gene: VAPB - ENSACAG00000014708 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000014708
NameVAPB
DescriptionVAMP (vesicle-associated membrane protein)-associated protein B and C [Source:HGNC Symbol;Acc:HGNC:12649]
OrganismAnolis carolinensis (green anole)
Synonym(s)als8, vap-b, vap-c
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007144embryonic post-anal tail
  • UBERON:0000068embryo stage
323
  • 323
98.40
  • 98.40
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
340
  • 340
98.31
  • 98.31
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
386
  • 386
98.09
  • 98.09
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
406
  • 406
97.99
  • 97.99
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
472
  • 472
  • 3.05e3
97.66
  • 97.66
  • 84.87
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
495
  • 495
  • 761
97.55
  • 97.55
  • 96.23
AEIR
  • AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
551
  • 551
97.27
  • 97.27
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
683
  • 683
96.61
  • 96.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
727
  • 727
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
728
  • 728
  • 1.36e3
96.39
  • 96.39
  • 93.25
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.02e3
  • 1.02e3
94.96
  • 94.96
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.32e3
  • 1.32e3
93.43
  • 93.43
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.39e3
  • 1.39e3
93.12
  • 93.12
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
2.62e3
  • 2.62e3
87.01
  • 87.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Sauria1 species1 geneCompare expression
Amniota16 species18 genesCompare expression
Euteleostomi17 species19 genesCompare expression

Orthology information comes from OMA : ENSACAG00000014708.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSACAG00000014708.

Cross-references

EnsemblENSACAG00000014708 (VAPB)
HGNCHGNC:12649 (VAPB)
Uniprot/SPTREMBLH9GLH1, H9GLH1_ANOCA

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