Gene: VAPB - ENSACAG00000014708 - Anolis carolinensis (green anole)

General information

Ensembl ID	ENSACAG00000014708
Name	VAPB
Description	VAMP (vesicle-associated membrane protein)-associated protein B and C [Source:HGNC Symbol;Acc:HGNC:12649]
Organism	Anolis carolinensis (green anole)
Synonym(s)	als8, vap-b, vap-c
Orthologs(s)	19 orthologs
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0007144	embryonic post-anal tail	[+] 1 stage UBERON:0000068embryo stage	323 323	98.40 98.40	AEIR AEIR
UBERON:0005417	forelimb bud	[+] 1 stage UBERON:0000068embryo stage	340 340	98.31 98.31	AEIR AEIR
UBERON:0008812	hemipenis	[+] 1 stage UBERON:0000068embryo stage	386 386	98.09 98.09	AEIR AEIR
UBERON:0005418	hindlimb bud	[+] 1 stage UBERON:0000068embryo stage	406 406	97.99 97.99	AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000104life cycle UBERON:0000113post-juvenile adult stage	472 472 3.05e3	97.66 97.66 84.87	AEIR AEIR AEIR
UBERON:0001134	skeletal muscle tissue	[+] 2 stages UBERON:0000104life cycle UBERON:0000113post-juvenile adult stage	495 495 761	97.55 97.55 96.23	AEIR AEIR AEIR
UBERON:1000003	dewlap	[+] 1 stage UBERON:0000104life cycle	551 551	97.27 97.27	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000104life cycle	683 683	96.61 96.61	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000113post-juvenile adult stage	727 727	96.40 96.40	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000104life cycle UBERON:0000113post-juvenile adult stage	728 728 1.36e3	96.39 96.39 93.25	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000104life cycle	1.02e3 1.02e3	94.96 94.96	AEIR AEIR
UBERON:0002048	lung	[+] 1 stage UBERON:0000104life cycle	1.32e3 1.32e3	93.43 93.43	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000113post-juvenile adult stage	1.39e3 1.39e3	93.12 93.12	AEIR AEIR
UBERON:0002369	adrenal gland	[+] 1 stage UBERON:0000104life cycle	2.62e3 2.62e3	87.01 87.01	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Sauria	1 species Gallus gallus (chicken)	1 gene ENSGALG00000007549 VAPB	Compare expression	[+]
Amniota	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken)	18 genes ENSG00000124164 VAPB ENSMUSG00000054455 Vapb ENSPTRG00000013672 VAPB ENSGGOG00000007802 VAPB ENSMMUG00000004986 ENSMMUG00000021717 ENSRNOG00000005331 Vapb ENSBTAG00000017424 VAPB ENSSSCG00000007514 VAPB ENSECAG00000013265 VAPB ENSOCUG00000016488 VAPB ENSCAFG00000012110 VAPB ENSFCAG00000009291 VAPB ENSCPOG00000019919 ENSCPOG00000022834 ENSEEUG00000015340 VAPB ENSOANG00000009267 VAPB ENSGALG00000007549 VAPB	Compare expression	[+]
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken)	19 genes ENSG00000124164 VAPB ENSMUSG00000054455 Vapb ENSDARG00000070435 vapb ENSPTRG00000013672 VAPB ENSGGOG00000007802 VAPB ENSMMUG00000004986 ENSMMUG00000021717 ENSRNOG00000005331 Vapb ENSBTAG00000017424 VAPB ENSSSCG00000007514 VAPB ENSECAG00000013265 VAPB ENSOCUG00000016488 VAPB ENSCAFG00000012110 VAPB ENSFCAG00000009291 VAPB ENSCPOG00000019919 ENSCPOG00000022834 ENSEEUG00000015340 VAPB ENSOANG00000009267 VAPB ENSGALG00000007549 VAPB	Compare expression	[+]

Orthology information comes from OMA : ENSACAG00000014708.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Deuterostomia	1 gene ENSACAG00000003736 VAPA	Compare expression	[+]

Paralogy information comes from OMA : ENSACAG00000014708.

Cross-references

Ensembl	ENSACAG00000014708 (VAPB)
HGNC	HGNC:12649 (VAPB)
Uniprot/SPTREMBL	H9GLH1, H9GLH1_ANOCA