A. carolinensis Gene: COL3A1 - ENSACAG00000015062 - Anolis carolinensis (green anole)

General information

Ensembl IDENSACAG00000015062
NameCOL3A1
Descriptioncollagen, type III, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2201]
OrganismAnolis carolinensis (green anole)
Synonym(s)eds4a
Orthologs(s)17 orthologs
Paralog(s)289 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
925
  • 925
  • 1.88e3
95.41
  • 95.41
  • 90.70
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.14e3
  • 1.14e3
  • 3.12e3
94.34
  • 94.34
  • 84.49
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
1.31e3
  • 1.31e3
93.48
  • 93.48
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.38e3
  • 1.38e3
93.13
  • 93.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
2.43e3
  • 2.43e3
87.94
  • 87.94
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
2.53e3
  • 2.53e3
87.42
  • 87.42
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.47e3
  • 4.47e3
  • 5.61e3
77.79
  • 77.79
  • 72.15
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.54e3
  • 5.54e3
  • 1.34e4
72.51
  • 72.51
  • 33.60
AEIR
  • AEIR
  • AEIR
UBERON:1000003dewlap
  • UBERON:0000104life cycle
5.75e3
  • 5.75e3
71.43
  • 71.43
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.26e3
  • 6.26e3
68.90
  • 68.90
AEIR
  • AEIR
UBERON:0008812hemipenis
  • UBERON:0000068embryo stage
6.79e3
  • 6.79e3
66.30
  • 66.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
8.48e3
  • 8.48e3
57.88
  • 57.88
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
9.75e3
  • 9.75e3
51.61
  • 51.61
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.01e4
  • 1.01e4
50.06
  • 50.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSACAG00000015062.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria4 genesCompare expression
Eukaryota289 genesCompare expression

Paralogy information comes from OMA : ENSACAG00000015062.

Cross-references

EnsemblENSACAG00000015062 (COL3A1)
HGNCHGNC:2201 (COL3A1)
Uniprot/SPTREMBLH9GME7, H9GME7_ANOCA

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