B. taurus Gene: COL10A1 - ENSBTAG00000003078 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000003078
NameCOL10A1
Descriptioncollagen, type X, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2185]
OrganismBos taurus (cattle)
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
44.36
  • 44.36
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.34e4
42.25
  • 42.25
  • 42.08
AEIR
  • AEIR
  • AEIR
UBERON:0002000gluteal muscle
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
41.54
  • 41.54
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
40.70
  • 40.70
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
  • 1.58e4
40.61
  • 40.61
  • 31.51
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000068embryo stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.73e4
  • 2.04e4
38.47
  • 38.47
  • 25.08
  • 11.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
  • 1.54e4
  • 1.76e4
38.03
  • 38.03
  • 33.19
  • 23.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.88e4
  • 1.88e4
18.73
  • 18.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000003078.

Cross-references

EnsemblENSBTAG00000003078 (COL10A1)
HGNCHGNC:2185 (COL10A1)
EMBLDAAA02025799
Uniprot/SPTREMBLF1MZ30, F1MZ30_BOVIN

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