B. taurus Gene: VSX1 - ENSBTAG00000003335 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000003335
NameVSX1
Descriptionvisual system homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12723]
OrganismBos taurus (cattle)
Synonym(s)ppcd, ppcd1, ppd, rinx
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.08e3
  • 1.08e3
95.32
  • 95.32
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
2.14e3
  • 2.14e3
90.75
  • 90.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
3.85e3
  • 3.85e3
  • 4.30e3
  • 1.37e4
  • 1.41e4
83.31
  • 83.31
  • 81.39
  • 40.61
  • 38.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
3.89e3
  • 3.89e3
83.14
  • 83.14
AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
53.03
  • 53.03
AEIR
  • AEIR
UBERON:0004358caput epididymis
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
44.94
  • 44.94
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
43.51
  • 43.51
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
  • 1.34e4
41.80
  • 41.80
  • 41.76
AEIR
  • AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
40.68
  • 40.68
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.79e4
40.13
  • 40.13
  • 22.46
AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
36.40
  • 36.40
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
  • 1.94e4
34.52
  • 34.52
  • 16.07
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
33.86
  • 33.86
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
  • 1.71e4
33.33
  • 33.33
  • 25.84
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
31.49
  • 31.49
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
1.80e4
  • 1.80e4
21.99
  • 21.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000003335.

Cross-references

EnsemblENSBTAG00000003335 (VSX1)
HGNCHGNC:12723 (VSX1)
EMBLAF251032
Uniprot/SWISSPROTQ9GMA3, VSX1_BOVIN

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