B. taurus Gene: HMGCS2 - ENSBTAG00000003898 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000003898
NameHMGCS2
Description3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:5008]
OrganismBos taurus (cattle)
Synonym(s)hmgcoa
Orthologs(s)23 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0010153rumen papilla
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
71.0
  • 71.0
  • 72.0
99.70
  • 99.70
  • 99.69
AEIR
  • AEIR
  • AEIR
UBERON:0007361ruminant reticulum
  • UBERON:0018241prime adult stage
93.0
  • 93.0
99.60
  • 99.60
AEIR
  • AEIR
UBERON:0007362omasum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
133
  • 133
  • 133
99.43
  • 99.43
  • 99.43
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
192
  • 192
  • 281
  • 1.18e3
99.17
  • 99.17
  • 98.79
  • 94.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007358abomasum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
261
  • 261
  • 261
98.87
  • 98.87
  • 98.87
AEIR
  • AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
468
  • 468
97.98
  • 97.98
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
587
  • 587
  • 1.91e4
97.46
  • 97.46
  • 17.08
AEIR
  • AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
648
  • 648
97.20
  • 97.20
AEIR
  • AEIR
UBERON:0001156ascending colon
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.03e3
  • 1.03e3
  • 1.03e3
95.56
  • 95.56
  • 95.54
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.03e3
  • 1.03e3
  • 1.08e4
95.55
  • 95.55
  • 53.02
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
1.39e3
  • 1.39e3
93.98
  • 93.98
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000104life cycle
2.10e3
  • 2.10e3
90.89
  • 90.89
AEIR
  • AEIR
UBERON:0001158descending colon
  • UBERON:0000104life cycle
2.83e3
  • 2.83e3
87.72
  • 87.72
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000104life cycle
7.71e3
  • 7.71e3
66.61
  • 66.61
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000104life cycle
9.00e3
  • 9.00e3
60.99
  • 60.99
AEIR
  • AEIR
UBERON:0001374biceps femoris
  • UBERON:0000104life cycle
9.46e3
  • 9.46e3
59.00
  • 59.00
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
9.47e3
  • 9.47e3
58.94
  • 58.94
AEIR
  • AEIR
UBERON:0001477infraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
9.98e3
  • 9.98e3
  • 1.00e4
56.73
  • 56.73
  • 56.59
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
  • 1.55e4
53.61
  • 53.61
  • 32.69
AEIR
  • AEIR
  • AEIR
UBERON:0004180mammary gland fat
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
52.87
  • 52.87
AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
51.43
  • 51.43
AEIR
  • AEIR
UBERON:0002383supraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
  • 1.15e4
50.29
  • 50.29
  • 50.28
AEIR
  • AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
1.18e4
  • 1.18e4
48.95
  • 48.95
AEIR
  • AEIR
UBERON:0001826nasal cavity mucosa
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
48.42
  • 48.42
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
46.86
  • 46.86
AEIR
  • AEIR
UBERON:0007367surface of tongue
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
44.30
  • 44.30
AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
44.16
  • 44.16
AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
42.80
  • 42.80
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
41.64
  • 41.64
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
41.29
  • 41.29
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
  • 1.67e4
40.61
  • 40.61
  • 27.78
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.63e4
40.10
  • 40.10
  • 29.20
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
39.98
  • 39.98
AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
38.79
  • 38.79
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
37.09
  • 37.09
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
36.77
  • 36.77
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
35.90
  • 35.90
AEIR
  • AEIR
UBERON:0002507abdominal lymph node
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
35.01
  • 35.01
AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
  • 1.80e4
33.96
  • 33.96
  • 22.03
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
33.43
  • 33.43
AEIR
  • AEIR
UBERON:0002110gall bladder
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
32.85
  • 32.85
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.56e4
  • 1.56e4
  • 2.02e4
32.19
  • 32.19
  • 12.64
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
  • 1.74e4
28.39
  • 28.39
  • 24.61
AEIR
  • AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
21.71
  • 21.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000003898.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSBTAG00000003898.

Cross-references

EnsemblENSBTAG00000003898 (HMGCS2)
HGNCHGNC:5008 (HMGCS2)
EMBLBC112666
Uniprot/SWISSPROTHMCS2_BOVIN, Q2KIE6

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