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B. taurus Gene: RPGRIP1 - ENSBTAG00000004694 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000004694
NameRPGRIP1
Descriptionretinitis pigmentosa GTPase regulator interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13436]
OrganismBos taurus (cattle)
Synonym(s)cord13, lca6, rgi1, rpgrip
Orthologs(s)13 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000018spermatid
  • UBERON:0018241prime adult stage
292
  • 292
98.74
  • 98.74
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
528
  • 528
97.72
  • 97.72
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
648
  • 648
  • 988
  • 1.08e3
  • 8.12e3
97.20
  • 97.20
  • 95.72
  • 95.31
  • 64.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
2.36e3
  • 2.36e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0004358caput epididymis
  • UBERON:0018241prime adult stage
7.81e3
  • 7.81e3
66.16
  • 66.16
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
9.72e3
  • 9.72e3
  • 1.32e4
57.86
  • 57.86
  • 42.73
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
  • 1.46e4
  • 1.73e4
47.69
  • 47.69
  • 36.58
  • 25.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
47.62
  • 47.62
AEIR
  • AEIR
UBERON:0002383supraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
  • 1.24e4
46.48
  • 46.48
  • 46.38
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.24e4
46.45
  • 46.45
  • 46.43
AEIR
  • AEIR
  • AEIR
UBERON:0001381semimembranosus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.34e4
46.43
  • 46.43
  • 41.80
AEIR
  • AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.24e4
  • 1.24e4
46.36
  • 46.36
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
45.60
  • 45.60
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
43.25
  • 43.25
AEIR
  • AEIR
UBERON:0000051fornix of vagina
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
42.75
  • 42.75
AEIR
  • AEIR
UBERON:0001156ascending colon
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.33e4
42.37
  • 42.37
  • 42.33
AEIR
  • AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
  • 1.41e4
  • 1.52e4
42.13
  • 42.13
  • 38.84
  • 34.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
41.86
  • 41.86
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
40.62
  • 40.62
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
40.58
  • 40.58
AEIR
  • AEIR
UBERON:0003126trachea
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
40.40
  • 40.40
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
40.00
  • 40.00
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.50e4
39.26
  • 39.26
  • 35.18
AEIR
  • AEIR
  • AEIR
UBERON:0000378tongue muscle
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
38.93
  • 38.93
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.53e4
38.65
  • 38.65
  • 33.49
AEIR
  • AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
38.65
  • 38.65
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
  • 1.55e4
  • 1.56e4
38.58
  • 38.58
  • 32.99
  • 32.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
38.36
  • 38.36
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
1.43e4
  • 1.43e4
38.18
  • 38.18
AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
38.07
  • 38.07
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
37.55
  • 37.55
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
  • 1.80e4
37.44
  • 37.44
  • 22.19
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
  • 1.52e4
37.24
  • 37.24
  • 34.08
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
  • 1.52e4
36.79
  • 36.79
  • 34.08
AEIR
  • AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
36.54
  • 36.54
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
36.47
  • 36.47
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
35.85
  • 35.85
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
  • 1.50e4
  • 1.61e4
35.75
  • 35.75
  • 35.15
  • 30.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
35.65
  • 35.65
AEIR
  • AEIR
UBERON:0004180mammary gland fat
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
35.52
  • 35.52
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
35.33
  • 35.33
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
  • 1.56e4
35.25
  • 35.25
  • 32.21
AEIR
  • AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
35.14
  • 35.14
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
35.10
  • 35.10
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
35.06
  • 35.06
AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
35.01
  • 35.01
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 1.55e4
34.45
  • 34.45
  • 32.91
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
33.31
  • 33.31
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
  • 1.58e4
33.29
  • 33.29
  • 31.51
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
32.40
  • 32.40
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
29.29
  • 29.29
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.66e4
  • 1.66e4
28.14
  • 28.14
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.69e4
  • 1.69e4
26.68
  • 26.68
AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
1.70e4
  • 1.70e4
26.39
  • 26.39
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
1.72e4
  • 1.72e4
25.44
  • 25.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000004694.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSBTAG00000004694.

Cross-references

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