B. taurus Gene: PTX4 - ENSBTAG00000005148 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000005148
NamePTX4
Descriptionpentraxin 4 [Source:HGNC Symbol;Acc:HGNC:14171]
OrganismBos taurus (cattle)
Synonym(s)c16orf38, loc524063
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
1.05e4
  • 1.05e4
54.63
  • 54.63
AEIR
  • AEIR
UBERON:0000378tongue muscle
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
42.84
  • 42.84
AEIR
  • AEIR
UBERON:0007367surface of tongue
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
40.34
  • 40.34
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
  • 2.04e4
37.02
  • 37.02
  • 11.51
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
1.74e4
  • 1.74e4
24.47
  • 24.47
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
1.85e4
  • 1.85e4
19.67
  • 19.67
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.89e4
  • 1.89e4
18.15
  • 18.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria2 species2 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000005148.

Cross-references

EnsemblENSBTAG00000005148 (PTX4)
HGNCHGNC:14171 (PTX4)
EMBLDAAA02057300, GJ062847
Uniprot/SPTREMBLE1B8G2, E1B8G2_BOVIN

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