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B. taurus Gene: PRPH2 - ENSBTAG00000005971 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000005971
NamePRPH2
Descriptionperipherin 2 (retinal degeneration, slow) [Source:HGNC Symbol;Acc:HGNC:9942]
OrganismBos taurus (cattle)
Synonym(s)cacd2, rd2, rds, rp7, tspan22
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000104life cycle
13.7
  • 13.7
99.95
  • 99.95
AEIR
  • AEIR
UBERON:0001381semimembranosus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
  • 1.36e4
44.87
  • 44.87
  • 41.09
AEIR
  • AEIR
  • AEIR
UBERON:0000051fornix of vagina
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
43.40
  • 43.40
AEIR
  • AEIR
UBERON:0001000vas deferens
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
43.36
  • 43.36
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
42.64
  • 42.64
AEIR
  • AEIR
UBERON:0001477infraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
  • 1.36e4
41.25
  • 41.25
  • 41.21
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
  • 1.51e4
  • 1.65e4
40.61
  • 40.61
  • 34.52
  • 28.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
40.21
  • 40.21
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
40.16
  • 40.16
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.39e4
  • 1.39e4
  • 1.51e4
  • 1.63e4
  • 1.64e4
39.69
  • 39.69
  • 34.77
  • 29.54
  • 28.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007361ruminant reticulum
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
39.59
  • 39.59
AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
39.24
  • 39.24
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
37.76
  • 37.76
AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
37.57
  • 37.57
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
  • 1.94e4
37.56
  • 37.56
  • 16.07
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
37.55
  • 37.55
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
37.45
  • 37.45
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
37.29
  • 37.29
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
37.26
  • 37.26
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
34.25
  • 34.25
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
34.19
  • 34.19
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
  • 1.56e4
33.99
  • 33.99
  • 32.58
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
33.06
  • 33.06
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
32.80
  • 32.80
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
32.56
  • 32.56
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
  • 1.59e4
32.24
  • 32.24
  • 31.23
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
32.19
  • 32.19
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
30.81
  • 30.81
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
30.15
  • 30.15
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.64e4
  • 1.64e4
  • 1.68e4
28.93
  • 28.93
  • 27.09
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
28.20
  • 28.20
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
27.13
  • 27.13
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
1.70e4
  • 1.70e4
26.33
  • 26.33
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
1.71e4
  • 1.71e4
25.90
  • 25.90
AEIR
  • AEIR
UBERON:0008285rumen epithelium
  • UBERON:0018241prime adult stage
1.73e4
  • 1.73e4
25.04
  • 25.04
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.81e4
  • 1.81e4
21.62
  • 21.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000005971.

Cross-references

EnsemblENSBTAG00000005971 (PRPH2)
HGNCHGNC:9942 (PRPH2)
EMBLDAAA02055075
Uniprot/SPTREMBLF1N0X5, F1N0X5_BOVIN

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