B. taurus Gene: TRIM13 - ENSBTAG00000008173 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000008173
NameTRIM13
Descriptiontripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
OrganismBos taurus (cattle)
Synonym(s)dleu5, f1mgy4, leu5, rfp2, rnf77
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000018spermatid
  • UBERON:0018241prime adult stage
206
  • 206
99.11
  • 99.11
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
322
  • 322
98.61
  • 98.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
542
  • 542
  • 627
  • 3.93e3
  • 1.37e4
97.66
  • 97.66
  • 97.29
  • 82.95
  • 40.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0034908scapular muscle
  • UBERON:0000104life cycle
3.15e3
  • 3.15e3
86.36
  • 86.36
AEIR
  • AEIR
UBERON:0004358caput epididymis
  • UBERON:0018241prime adult stage
3.60e3
  • 3.60e3
84.40
  • 84.40
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.61e3
  • 3.61e3
  • 7.39e3
84.34
  • 84.34
  • 67.98
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
3.63e3
  • 3.63e3
84.25
  • 84.25
AEIR
  • AEIR
CL:0000775neutrophil
  • UBERON:0018241prime adult stage
3.86e3
  • 3.86e3
83.29
  • 83.29
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.88e3
  • 3.88e3
  • 5.73e3
83.20
  • 83.20
  • 75.19
AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
4.11e3
  • 4.11e3
  • 5.25e3
  • 5.37e3
82.19
  • 82.19
  • 77.23
  • 76.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
4.43e3
  • 4.43e3
80.80
  • 80.80
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0018241prime adult stage
4.48e3
  • 4.48e3
80.59
  • 80.59
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.49e3
  • 4.49e3
  • 5.54e3
  • 1.21e4
80.56
  • 80.56
  • 76.01
  • 47.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
4.53e3
  • 4.53e3
80.36
  • 80.36
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
4.57e3
  • 4.57e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000104life cycle
4.63e3
  • 4.63e3
79.92
  • 79.92
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.65e3
  • 4.65e3
  • 5.13e3
79.84
  • 79.84
  • 77.78
AEIR
  • AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
4.66e3
  • 4.66e3
79.82
  • 79.82
AEIR
  • AEIR
UBERON:0000378tongue muscle
  • UBERON:0000104life cycle
4.76e3
  • 4.76e3
79.36
  • 79.36
AEIR
  • AEIR
UBERON:0002507abdominal lymph node
  • UBERON:0018241prime adult stage
4.77e3
  • 4.77e3
79.35
  • 79.35
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.77e3
  • 4.77e3
  • 6.45e3
79.32
  • 79.32
  • 72.05
AEIR
  • AEIR
  • AEIR
UBERON:0007367surface of tongue
  • UBERON:0000104life cycle
4.81e3
  • 4.81e3
79.14
  • 79.14
AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.91e3
  • 4.91e3
  • 5.04e3
  • 6.27e3
78.72
  • 78.72
  • 78.17
  • 72.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.92e3
  • 4.92e3
  • 6.02e3
78.69
  • 78.69
  • 73.93
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000104life cycle
4.92e3
  • 4.92e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0001886choroid plexus
  • UBERON:0018241prime adult stage
4.93e3
  • 4.93e3
78.64
  • 78.64
AEIR
  • AEIR
UBERON:0001477infraspinatus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.94e3
  • 4.94e3
  • 4.96e3
78.58
  • 78.58
  • 78.52
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
4.98e3
  • 4.98e3
78.42
  • 78.42
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000104life cycle
5.00e3
  • 5.00e3
78.35
  • 78.35
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
5.05e3
  • 5.05e3
78.10
  • 78.10
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.07e3
  • 5.07e3
  • 5.96e3
78.02
  • 78.02
  • 74.18
AEIR
  • AEIR
  • AEIR
UBERON:0002383supraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.09e3
  • 5.09e3
  • 5.10e3
77.96
  • 77.96
  • 77.89
AEIR
  • AEIR
  • AEIR
UBERON:0001156ascending colon
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.12e3
  • 5.12e3
  • 5.15e3
77.80
  • 77.80
  • 77.69
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
5.16e3
  • 5.16e3
  • 8.44e3
77.66
  • 77.66
  • 63.43
AEIR
  • AEIR
  • AEIR
UBERON:0007358abomasum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.27e3
  • 5.27e3
  • 5.30e3
77.18
  • 77.18
  • 77.05
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
5.27e3
  • 5.27e3
77.15
  • 77.15
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
5.31e3
  • 5.31e3
76.98
  • 76.98
AEIR
  • AEIR
UBERON:0007362omasum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.43e3
  • 5.43e3
  • 5.53e3
76.47
  • 76.47
  • 76.03
AEIR
  • AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
5.43e3
  • 5.43e3
76.46
  • 76.46
AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0018241prime adult stage
5.45e3
  • 5.45e3
76.39
  • 76.39
AEIR
  • AEIR
UBERON:0015869retropharyngeal lymph node
  • UBERON:0000104life cycle
5.47e3
  • 5.47e3
76.30
  • 76.30
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.54e3
  • 5.54e3
75.99
  • 75.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
5.62e3
  • 5.62e3
75.65
  • 75.65
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
5.63e3
  • 5.63e3
75.60
  • 75.60
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
5.69e3
  • 5.69e3
75.33
  • 75.33
AEIR
  • AEIR
UBERON:0003984uterine tube infundibulum
  • UBERON:0000104life cycle
5.71e3
  • 5.71e3
75.24
  • 75.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.72e3
  • 5.72e3
  • 5.85e3
  • 6.04e3
75.20
  • 75.20
  • 74.66
  • 73.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
5.73e3
  • 5.73e3
75.15
  • 75.15
AEIR
  • AEIR
UBERON:0007361ruminant reticulum
  • UBERON:0018241prime adult stage
5.75e3
  • 5.75e3
75.09
  • 75.09
AEIR
  • AEIR
UBERON:0001381semimembranosus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.81e3
  • 5.81e3
  • 6.39e3
74.81
  • 74.81
  • 72.30
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
5.83e3
  • 5.83e3
74.73
  • 74.73
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
5.85e3
  • 5.85e3
  • 5.99e3
  • 7.12e3
  • 7.13e3
74.64
  • 74.64
  • 74.02
  • 69.13
  • 69.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.85e3
  • 5.85e3
  • 6.53e3
74.64
  • 74.64
  • 71.72
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.94e3
  • 5.94e3
  • 7.53e3
74.27
  • 74.27
  • 67.35
AEIR
  • AEIR
  • AEIR
UBERON:0001000vas deferens
  • UBERON:0018241prime adult stage
6.08e3
  • 6.08e3
73.65
  • 73.65
AEIR
  • AEIR
UBERON:0008285rumen epithelium
  • UBERON:0018241prime adult stage
6.08e3
  • 6.08e3
73.63
  • 73.63
AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
6.14e3
  • 6.14e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0001378rectus femoris
  • UBERON:0000104life cycle
6.20e3
  • 6.20e3
73.15
  • 73.15
AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
6.23e3
  • 6.23e3
73.00
  • 73.00
AEIR
  • AEIR
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
6.23e3
  • 6.23e3
72.99
  • 72.99
AEIR
  • AEIR
UBERON:0001158descending colon
  • UBERON:0000104life cycle
6.24e3
  • 6.24e3
72.97
  • 72.97
AEIR
  • AEIR
UBERON:0010153rumen papilla
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.26e3
  • 6.26e3
  • 6.29e3
72.88
  • 72.88
  • 72.73
AEIR
  • AEIR
  • AEIR
UBERON:0003126trachea
  • UBERON:0000104life cycle
6.30e3
  • 6.30e3
72.71
  • 72.71
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0018241prime adult stage
6.32e3
  • 6.32e3
72.61
  • 72.61
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
6.44e3
  • 6.44e3
72.10
  • 72.10
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.44e3
  • 6.44e3
  • 6.47e3
72.08
  • 72.08
  • 71.97
AEIR
  • AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
6.48e3
  • 6.48e3
71.93
  • 71.93
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
6.57e3
  • 6.57e3
71.54
  • 71.54
AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
6.57e3
  • 6.57e3
71.51
  • 71.51
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
6.62e3
  • 6.62e3
71.32
  • 71.32
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.64e3
  • 6.64e3
  • 7.56e3
71.24
  • 71.24
  • 67.24
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0000104life cycle
6.66e3
  • 6.66e3
71.15
  • 71.15
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
6.67e3
  • 6.67e3
71.08
  • 71.08
AEIR
  • AEIR
UBERON:0004180mammary gland fat
  • UBERON:0018241prime adult stage
6.75e3
  • 6.75e3
70.76
  • 70.76
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.83e3
  • 6.83e3
  • 6.84e3
70.41
  • 70.41
  • 70.34
AEIR
  • AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
6.84e3
  • 6.84e3
70.36
  • 70.36
AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
6.87e3
  • 6.87e3
70.21
  • 70.21
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
6.87e3
  • 6.87e3
70.21
  • 70.21
AEIR
  • AEIR
UBERON:0001374biceps femoris
  • UBERON:0000104life cycle
6.94e3
  • 6.94e3
69.94
  • 69.94
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
6.95e3
  • 6.95e3
69.88
  • 69.88
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0000104life cycle
6.95e3
  • 6.95e3
69.87
  • 69.87
AEIR
  • AEIR
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
6.96e3
  • 6.96e3
69.84
  • 69.84
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.05e3
  • 7.05e3
  • 7.08e3
69.46
  • 69.46
  • 69.32
AEIR
  • AEIR
  • AEIR
UBERON:0000051fornix of vagina
  • UBERON:0000104life cycle
7.12e3
  • 7.12e3
69.16
  • 69.16
AEIR
  • AEIR
UBERON:0002110gall bladder
  • UBERON:0000104life cycle
7.36e3
  • 7.36e3
68.09
  • 68.09
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
7.37e3
  • 7.37e3
68.06
  • 68.06
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
7.40e3
  • 7.40e3
67.93
  • 67.93
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
7.42e3
  • 7.42e3
67.86
  • 67.86
AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
7.55e3
  • 7.55e3
67.27
  • 67.27
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
7.55e3
  • 7.55e3
67.27
  • 67.27
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
7.96e3
  • 7.96e3
65.50
  • 65.50
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
8.40e3
  • 8.40e3
63.62
  • 63.62
AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • UBERON:0000104life cycle
8.42e3
  • 8.42e3
63.50
  • 63.50
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.74e3
  • 8.74e3
62.12
  • 62.12
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
8.95e3
  • 8.95e3
61.21
  • 61.21
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
9.32e3
  • 9.32e3
59.61
  • 59.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000008173.

Cross-references

EnsemblENSBTAG00000008173 (TRIM13)
HGNCHGNC:9976 (TRIM13)
EMBLBC109749, DAAA02032918
Uniprot/SWISSPROTQ32L60, TRI13_BOVIN

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