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B. taurus Gene: SLC22A1 - ENSBTAG00000008540 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000008540
NameSLC22A1
Descriptionsolute carrier family 22 (organic cation transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10963]
OrganismBos taurus (cattle)
Synonym(s)oct1
Orthologs(s)13 orthologs
Paralog(s)34 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
332
  • 332
98.57
  • 98.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
507
  • 507
  • 629
  • 1.69e3
97.81
  • 97.81
  • 97.28
  • 92.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
616
  • 616
97.34
  • 97.34
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.02e3
  • 4.02e3
  • 2.05e4
82.56
  • 82.56
  • 11.03
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
8.36e3
  • 8.36e3
63.77
  • 63.77
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
9.86e3
  • 9.86e3
57.28
  • 57.28
AEIR
  • AEIR
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
52.20
  • 52.20
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
46.67
  • 46.67
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
46.16
  • 46.16
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
44.54
  • 44.54
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
43.46
  • 43.46
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
  • 1.53e4
43.04
  • 43.04
  • 33.80
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
40.90
  • 40.90
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
37.68
  • 37.68
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
35.98
  • 35.98
AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
34.19
  • 34.19
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
  • 1.90e4
33.59
  • 33.59
  • 17.60
AEIR
  • AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
30.60
  • 30.60
AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
  • 2.05e4
28.99
  • 28.99
  • 11.22
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
28.97
  • 28.97
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
27.45
  • 27.45
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
1.76e4
  • 1.76e4
23.68
  • 23.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000008540.

Paralogs (same species)

Cross-references

EnsemblENSBTAG00000008540 (SLC22A1)
HGNCHGNC:10963 (SLC22A1)
EMBLBC151505
Uniprot/SWISSPROTA7MBE0, S22A1_BOVIN

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