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B. taurus Gene: PCDH17 - ENSBTAG00000010420 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000010420
NamePCDH17
Descriptionprotocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
OrganismBos taurus (cattle)
Synonym(s)pcdh68, pch68
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.67e3
  • 7.67e3
66.75
  • 66.75
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
7.75e3
  • 7.75e3
66.42
  • 66.42
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.20e3
  • 8.20e3
  • 8.92e3
64.46
  • 64.46
  • 61.34
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
9.31e3
  • 9.31e3
59.66
  • 59.66
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
9.94e3
  • 9.94e3
  • 1.28e4
56.92
  • 56.92
  • 44.32
AEIR
  • AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
55.58
  • 55.58
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
53.15
  • 53.15
AEIR
  • AEIR
UBERON:0001886choroid plexus
  • UBERON:0018241prime adult stage
1.10e4
  • 1.10e4
52.30
  • 52.30
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
52.02
  • 52.02
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
50.81
  • 50.81
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
  • 1.23e4
50.67
  • 50.67
  • 46.72
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
1.14e4
  • 1.14e4
50.58
  • 50.58
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
49.94
  • 49.94
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
49.67
  • 49.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
  • 1.37e4
  • 1.47e4
  • 1.48e4
47.81
  • 47.81
  • 40.61
  • 36.39
  • 35.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
47.47
  • 47.47
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
47.12
  • 47.12
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
45.87
  • 45.87
AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
45.86
  • 45.86
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
  • 1.34e4
45.62
  • 45.62
  • 42.10
AEIR
  • AEIR
  • AEIR
UBERON:0034908scapular muscle
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
45.33
  • 45.33
AEIR
  • AEIR
UBERON:0002000gluteal muscle
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
44.77
  • 44.77
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
44.51
  • 44.51
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
  • 1.56e4
44.41
  • 44.41
  • 32.51
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
44.21
  • 44.21
AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
43.90
  • 43.90
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
  • 1.36e4
  • 1.46e4
43.46
  • 43.46
  • 40.93
  • 36.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
  • 1.50e4
42.47
  • 42.47
  • 35.16
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
42.33
  • 42.33
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
  • 1.34e4
41.90
  • 41.90
  • 41.88
AEIR
  • AEIR
  • AEIR
UBERON:0002110gall bladder
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
41.78
  • 41.78
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
  • 1.47e4
40.94
  • 40.94
  • 36.34
AEIR
  • AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
  • 1.53e4
40.67
  • 40.67
  • 33.80
AEIR
  • AEIR
  • AEIR
UBERON:0008285rumen epithelium
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
40.08
  • 40.08
AEIR
  • AEIR
UBERON:0000051fornix of vagina
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
39.67
  • 39.67
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
  • 1.40e4
39.51
  • 39.51
  • 39.49
AEIR
  • AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.40e4
39.50
  • 39.50
  • 39.42
AEIR
  • AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
39.35
  • 39.35
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.55e4
39.22
  • 39.22
  • 32.70
AEIR
  • AEIR
  • AEIR
UBERON:0007367surface of tongue
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
39.21
  • 39.21
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
38.82
  • 38.82
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000112sexually immature stage
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
  • 1.45e4
  • 1.46e4
  • 1.47e4
38.78
  • 38.78
  • 37.06
  • 36.88
  • 36.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
38.32
  • 38.32
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
38.31
  • 38.31
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
37.58
  • 37.58
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
  • 1.53e4
36.98
  • 36.98
  • 33.60
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
  • 1.65e4
36.93
  • 36.93
  • 28.45
AEIR
  • AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
36.78
  • 36.78
AEIR
  • AEIR
UBERON:0002507abdominal lymph node
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
36.29
  • 36.29
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
  • 1.55e4
35.98
  • 35.98
  • 32.80
AEIR
  • AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
35.73
  • 35.73
AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
35.25
  • 35.25
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
35.12
  • 35.12
AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
1.51e4
  • 1.51e4
34.70
  • 34.70
AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
34.47
  • 34.47
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
34.43
  • 34.43
AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
34.35
  • 34.35
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
33.49
  • 33.49
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
28.48
  • 28.48
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.65e4
  • 1.65e4
28.34
  • 28.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000010420.

Cross-references

EnsemblENSBTAG00000010420 (PCDH17)
HGNCHGNC:14267 (PCDH17)
EMBLDAAA02032623, DAAA02032624
Uniprot/SPTREMBLE1BAU4, E1BAU4_BOVIN

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