B. taurus Gene: VAX2 - ENSBTAG00000010605 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000010605
NameVAX2
Descriptionventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]
OrganismBos taurus (cattle)
Synonym(s)dres93
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000104life cycle
4.73e3
  • 4.73e3
79.49
  • 79.49
AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
8.60e3
  • 8.60e3
62.74
  • 62.74
AEIR
  • AEIR
UBERON:0034908scapular muscle
  • UBERON:0000104life cycle
9.14e3
  • 9.14e3
60.40
  • 60.40
AEIR
  • AEIR
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
50.76
  • 50.76
AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
49.53
  • 49.53
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
48.47
  • 48.47
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
48.40
  • 48.40
AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
48.08
  • 48.08
AEIR
  • AEIR
UBERON:0002383supraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
  • 1.22e4
47.49
  • 47.49
  • 47.31
AEIR
  • AEIR
  • AEIR
UBERON:0002000gluteal muscle
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
44.38
  • 44.38
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.34e4
  • 1.34e4
  • 1.36e4
  • 1.61e4
  • 1.66e4
42.04
  • 42.04
  • 41.22
  • 30.25
  • 28.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
  • 1.48e4
  • 1.60e4
40.61
  • 40.61
  • 35.93
  • 30.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
39.77
  • 39.77
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
39.24
  • 39.24
AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
38.65
  • 38.65
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
38.44
  • 38.44
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
  • 1.53e4
34.61
  • 34.61
  • 33.48
AEIR
  • AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
32.96
  • 32.96
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
32.41
  • 32.41
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 1.68e4
31.94
  • 31.94
  • 27.09
AEIR
  • AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
30.59
  • 30.59
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
29.52
  • 29.52
AEIR
  • AEIR
UBERON:0008285rumen epithelium
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
29.39
  • 29.39
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
1.72e4
  • 1.72e4
25.66
  • 25.66
AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.78e4
  • 1.78e4
  • 2.05e4
22.84
  • 22.84
  • 11.22
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0018241prime adult stage
1.78e4
  • 1.78e4
22.68
  • 22.68
AEIR
  • AEIR
UBERON:0003984uterine tube infundibulum
  • UBERON:0000104life cycle
1.81e4
  • 1.81e4
21.52
  • 21.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000010605.

Cross-references

EnsemblENSBTAG00000010605 (VAX2)
HGNCHGNC:12661 (VAX2)
EMBLDAAA02030410, DAAA02030411
Uniprot/SPTREMBLE1BBM6, E1BBM6_BOVIN

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