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B. taurus Gene: RTN4 - ENSBTAG00000011104 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000011104
NameRTN4
Descriptionreticulon 4 [Source:HGNC Symbol;Acc:HGNC:14085]
OrganismBos taurus (cattle)
Synonym(s)asy, kiaa0886, nogo, nsp-cl
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
42.0
  • 42.0
99.82
  • 99.82
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
77.0
  • 77.0
99.67
  • 99.67
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
87.4
  • 87.4
99.63
  • 99.63
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
93.6
  • 93.6
  • 205
99.60
  • 99.60
  • 99.12
AEIR
  • AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
95.0
  • 95.0
  • 136
  • 548
99.59
  • 99.59
  • 99.42
  • 97.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001374biceps femoris
  • UBERON:0000104life cycle
113
  • 113
99.51
  • 99.51
AEIR
  • AEIR
UBERON:0001477infraspinatus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
128
  • 128
  • 128
99.45
  • 99.45
  • 99.45
AEIR
  • AEIR
  • AEIR
UBERON:0001381semimembranosus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
135
  • 135
  • 183
99.42
  • 99.42
  • 99.21
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
137
  • 137
  • 137
99.41
  • 99.41
  • 99.41
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
140
  • 140
99.40
  • 99.40
AEIR
  • AEIR
UBERON:0001378rectus femoris
  • UBERON:0000104life cycle
145
  • 145
99.38
  • 99.38
AEIR
  • AEIR
UBERON:0002383supraspinatus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
151
  • 151
  • 151
99.35
  • 99.35
  • 99.35
AEIR
  • AEIR
  • AEIR
UBERON:0001886choroid plexus
  • UBERON:0018241prime adult stage
152
  • 152
99.35
  • 99.35
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
154
  • 154
  • 168
99.34
  • 99.34
  • 99.28
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
160
  • 160
  • 441
99.31
  • 99.31
  • 98.09
AEIR
  • AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000104life cycle
174
  • 174
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
175
  • 175
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
179
  • 179
99.23
  • 99.23
AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
187
  • 187
99.19
  • 99.19
AEIR
  • AEIR
UBERON:0000378tongue muscle
  • UBERON:0000104life cycle
190
  • 190
99.18
  • 99.18
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
201
  • 201
99.13
  • 99.13
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
214
  • 214
  • 249
  • 404
  • 642
99.08
  • 99.08
  • 98.92
  • 98.25
  • 97.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004180mammary gland fat
  • UBERON:0018241prime adult stage
234
  • 234
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
249
  • 249
98.93
  • 98.93
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
261
  • 261
98.87
  • 98.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
263
  • 263
98.86
  • 98.86
AEIR
  • AEIR
UBERON:0003126trachea
  • UBERON:0000104life cycle
266
  • 266
98.85
  • 98.85
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
276
  • 276
  • 731
98.81
  • 98.81
  • 96.84
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0000104life cycle
279
  • 279
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
281
  • 281
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
282
  • 282
98.78
  • 98.78
AEIR
  • AEIR
UBERON:0003984uterine tube infundibulum
  • UBERON:0000104life cycle
284
  • 284
98.77
  • 98.77
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
285
  • 285
  • 917
98.77
  • 98.77
  • 96.03
AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
302
  • 302
98.70
  • 98.70
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
308
  • 308
98.67
  • 98.67
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
308
  • 308
98.67
  • 98.67
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
320
  • 320
98.62
  • 98.62
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
320
  • 320
98.62
  • 98.62
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
324
  • 324
  • 329
98.60
  • 98.60
  • 98.58
AEIR
  • AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
328
  • 328
98.58
  • 98.58
AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
385
  • 385
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0001000vas deferens
  • UBERON:0018241prime adult stage
402
  • 402
98.26
  • 98.26
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
403
  • 403
98.26
  • 98.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
415
  • 415
  • 544
  • 720
98.20
  • 98.20
  • 97.64
  • 96.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
422
  • 422
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0007362omasum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
426
  • 426
  • 429
98.16
  • 98.16
  • 98.14
AEIR
  • AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
439
  • 439
98.10
  • 98.10
AEIR
  • AEIR
UBERON:0004358caput epididymis
  • UBERON:0018241prime adult stage
452
  • 452
98.05
  • 98.05
AEIR
  • AEIR
UBERON:0007361ruminant reticulum
  • UBERON:0018241prime adult stage
460
  • 460
98.01
  • 98.01
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
464
  • 464
97.99
  • 97.99
AEIR
  • AEIR
UBERON:0001158descending colon
  • UBERON:0000104life cycle
467
  • 467
97.98
  • 97.98
AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
482
  • 482
97.92
  • 97.92
AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
485
  • 485
97.90
  • 97.90
AEIR
  • AEIR
UBERON:0007367surface of tongue
  • UBERON:0000104life cycle
493
  • 493
97.87
  • 97.87
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
503
  • 503
  • 569
97.82
  • 97.82
  • 97.54
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
504
  • 504
97.82
  • 97.82
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
509
  • 509
97.80
  • 97.80
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000104life cycle
509
  • 509
97.80
  • 97.80
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
532
  • 532
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0001156ascending colon
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
533
  • 533
  • 538
97.69
  • 97.69
  • 97.67
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
539
  • 539
  • 548
97.67
  • 97.67
  • 97.63
AEIR
  • AEIR
  • AEIR
UBERON:0010153rumen papilla
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
539
  • 539
  • 556
97.67
  • 97.67
  • 97.59
AEIR
  • AEIR
  • AEIR
UBERON:0000051fornix of vagina
  • UBERON:0000104life cycle
540
  • 540
97.66
  • 97.66
AEIR
  • AEIR
UBERON:0002110gall bladder
  • UBERON:0000104life cycle
554
  • 554
97.60
  • 97.60
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
558
  • 558
97.58
  • 97.58
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000104life cycle
570
  • 570
97.53
  • 97.53
AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
573
  • 573
97.52
  • 97.52
AEIR
  • AEIR
UBERON:0007358abomasum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
595
  • 595
  • 597
97.43
  • 97.43
  • 97.42
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
610
  • 610
  • 679
97.36
  • 97.36
  • 97.06
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
634
  • 634
  • 870
97.26
  • 97.26
  • 96.24
AEIR
  • AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
635
  • 635
  • 643
97.25
  • 97.25
  • 97.22
AEIR
  • AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
668
  • 668
97.11
  • 97.11
AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • UBERON:0000104life cycle
672
  • 672
97.09
  • 97.09
AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0018241prime adult stage
674
  • 674
97.08
  • 97.08
AEIR
  • AEIR
UBERON:0002507abdominal lymph node
  • UBERON:0018241prime adult stage
674
  • 674
97.08
  • 97.08
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
718
  • 718
96.89
  • 96.89
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
727
  • 727
96.85
  • 96.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
731
  • 731
  • 782
96.84
  • 96.84
  • 96.61
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0018241prime adult stage
759
  • 759
96.71
  • 96.71
AEIR
  • AEIR
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
802
  • 802
96.53
  • 96.53
AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
823
  • 823
96.44
  • 96.44
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
844
  • 844
  • 1.41e3
  • 1.88e3
96.35
  • 96.35
  • 93.91
  • 91.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0000104life cycle
852
  • 852
96.31
  • 96.31
AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
886
  • 886
96.16
  • 96.16
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0018241prime adult stage
917
  • 917
96.03
  • 96.03
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
942
  • 942
95.92
  • 95.92
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
974
  • 974
95.78
  • 95.78
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.12e3
  • 1.12e3
95.15
  • 95.15
AEIR
  • AEIR
UBERON:0015869retropharyngeal lymph node
  • UBERON:0000104life cycle
1.20e3
  • 1.20e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.94e3
  • 1.94e3
  • 2.92e3
  • 3.43e3
  • 1.37e4
91.59
  • 91.59
  • 87.34
  • 85.14
  • 40.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
2.01e3
  • 2.01e3
91.28
  • 91.28
AEIR
  • AEIR
CL:0000775neutrophil
  • UBERON:0018241prime adult stage
2.86e3
  • 2.86e3
87.63
  • 87.63
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria8 species8 genesCompare expression
Mammalia9 species9 genesCompare expression
Amniota10 species10 genesCompare expression
Tetrapoda11 species11 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000011104.

Cross-references

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