B. taurus Gene: SDC1 - ENSBTAG00000011154 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000011154
NameSDC1
Descriptionsyndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
OrganismBos taurus (cattle)
Synonym(s)cd138, sdc, synd1, syndecan

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.20e3
  • 1.20e3
94.25079
  • 94.25079
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.86e3
  • 1.86e3
91.10657
  • 91.10657
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.90e3
  • 1.90e3
90.92267
  • 90.92267
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
6.70e3
  • 6.70e3
67.92200
  • 67.92200
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
9.63e3
  • 9.63e3
53.91559
  • 53.91559
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
42.70533
  • 42.70533
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
35.39028
  • 35.39028
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
27.76117
  • 27.76117
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
23.66375
  • 23.66375
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC123495
EnsemblENSBTAG00000011154 (SDC1)
HGNCHGNC:10658 (SDC1)
Uniprot/SWISSPROTQ08DZ5, SDC1_BOVIN

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