B. taurus Gene: SDC1 - ENSBTAG00000011154 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000011154
NameSDC1
Descriptionsyndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
OrganismBos taurus (cattle)
Synonym(s)cd138, sdc, synd1, syndecan

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.58e3
  • 1.58e3
92.66425
  • 92.66425
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.86e3
  • 1.86e3
91.35279
  • 91.35279
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.90e3
  • 1.90e3
91.17147
  • 91.17147
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0018241prime adult stage
2.22e3
  • 2.22e3
89.67772
  • 89.67772
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
4.79e3
  • 4.79e3
77.69312
  • 77.69312
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
6.71e3
  • 6.71e3
68.79339
  • 68.79339
AEIR
  • AEIR
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
8.15e3
  • 8.15e3
62.07730
  • 62.07730
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
9.63e3
  • 9.63e3
55.16775
  • 55.16775
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
44.40489
  • 44.40489
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
44.27360
  • 44.27360
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
40.36067
  • 40.36067
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
37.16277
  • 37.16277
AEIR
  • AEIR
UBERON:0034908scapular muscle
  • UBERON:0000104life cycle
1.35e4
  • 1.35e4
37.00058
  • 37.00058
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
35.36707
  • 35.36707
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
29.71467
  • 29.71467
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
25.73803
  • 25.73803
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC123495
EnsemblENSBTAG00000011154 (SDC1)
HGNCHGNC:10658 (SDC1)
Uniprot/SWISSPROTQ08DZ5, SDC1_BOVIN

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