B. taurus Gene: COL1A1 - ENSBTAG00000013103 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000013103
NameCOL1A1
Descriptioncollagen, type I, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2197]
OrganismBos taurus (cattle)
Synonym(s)oi4, q3mhm2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0034908scapular muscle
  • UBERON:0000104life cycle
242
  • 242
98.88
  • 98.88
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
386
  • 386
98.21
  • 98.21
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
459
  • 459
97.87
  • 97.87
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
465
  • 465
97.84
  • 97.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
523
  • 523
97.57
  • 97.57
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
728
  • 728
96.62
  • 96.62
AEIR
  • AEIR
UBERON:0002000gluteal muscle
  • UBERON:0000104life cycle
896
  • 896
95.83
  • 95.83
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0018241prime adult stage
1.14e3
  • 1.14e3
94.72
  • 94.72
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
1.27e3
  • 1.27e3
94.08
  • 94.08
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.53e3
  • 1.53e3
92.88
  • 92.88
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
2.38e3
  • 2.38e3
88.93
  • 88.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
2.96e3
  • 2.96e3
86.22
  • 86.22
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
3.17e3
  • 3.17e3
85.27
  • 85.27
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
3.19e3
  • 3.19e3
85.14
  • 85.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
4.60e3
  • 4.60e3
78.62
  • 78.62
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
8.58e3
  • 8.58e3
60.09
  • 60.09
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.68e3
  • 8.68e3
59.59
  • 59.59
AEIR
  • AEIR
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
40.55
  • 40.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC105184
EnsemblENSBTAG00000013103 (COL1A1)
HGNCHGNC:2197 (COL1A1)
Uniprot/SWISSPROTCO1A1_BOVIN, P02453

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