B. taurus Gene: OPN1SW - ENSBTAG00000016485 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000016485
NameOPN1SW
Descriptionopsin 1 (cone pigments), short-wave-sensitive [Source:HGNC Symbol;Acc:HGNC:1012]
OrganismBos taurus (cattle)
Synonym(s)bcp, bop, cbt
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000104life cycle
419
  • 419
98.19
  • 98.19
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
  • 1.66e4
  • 1.71e4
40.61
  • 40.61
  • 27.84
  • 25.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
36.53
  • 36.53
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
31.33
  • 31.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.82e4
  • 1.82e4
  • 1.88e4
21.01
  • 21.01
  • 18.34
AEIR
  • AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.84e4
  • 1.84e4
20.33
  • 20.33
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.84e4
  • 1.84e4
  • 1.95e4
20.08
  • 20.08
  • 15.44
AEIR
  • AEIR
  • AEIR
UBERON:0008285rumen epithelium
  • UBERON:0018241prime adult stage
1.92e4
  • 1.92e4
16.65
  • 16.65
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000016485.

Cross-references

EnsemblENSBTAG00000016485 (OPN1SW)
HGNCHGNC:1012 (OPN1SW)
EMBLU49760, U49761, U49762, U49763, U49764, U92557
Uniprot/SWISSPROTOPSB_BOVIN, P51490

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