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B. taurus Gene: VBP1 - ENSBTAG00000017265 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000017265
NameVBP1
Descriptionvon Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12662]
OrganismBos taurus (cattle)
Synonym(s)pfd3, pfdn3
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
718
  • 718
  • 4.24e3
96.89
  • 96.89
  • 81.62
AEIR
  • AEIR
  • AEIR
UBERON:0001381semimembranosus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
799
  • 799
  • 856
96.54
  • 96.54
  • 96.29
AEIR
  • AEIR
  • AEIR
UBERON:0000378tongue muscle
  • UBERON:0000104life cycle
799
  • 799
96.54
  • 96.54
AEIR
  • AEIR
UBERON:0001374biceps femoris
  • UBERON:0000104life cycle
844
  • 844
96.35
  • 96.35
AEIR
  • AEIR
UBERON:0001477infraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
846
  • 846
  • 860
96.34
  • 96.34
  • 96.28
AEIR
  • AEIR
  • AEIR
UBERON:0001378rectus femoris
  • UBERON:0000104life cycle
860
  • 860
96.28
  • 96.28
AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
867
  • 867
  • 882
  • 1.53e3
96.25
  • 96.25
  • 96.18
  • 93.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
880
  • 880
  • 1.27e3
96.19
  • 96.19
  • 94.48
AEIR
  • AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
901
  • 901
  • 908
96.10
  • 96.10
  • 96.07
AEIR
  • AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
993
  • 993
95.70
  • 95.70
AEIR
  • AEIR
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
1.01e3
  • 1.01e3
95.64
  • 95.64
AEIR
  • AEIR
UBERON:0002383supraspinatus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.02e3
  • 1.02e3
  • 1.04e3
95.59
  • 95.59
  • 95.51
AEIR
  • AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
1.17e3
  • 1.17e3
94.93
  • 94.93
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000104life cycle
1.18e3
  • 1.18e3
94.88
  • 94.88
AEIR
  • AEIR
UBERON:0001886choroid plexus
  • UBERON:0018241prime adult stage
1.19e3
  • 1.19e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.25e3
  • 1.25e3
  • 1.26e3
94.60
  • 94.60
  • 94.53
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.26e3
  • 1.26e3
  • 2.27e3
94.55
  • 94.55
  • 90.18
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000068embryo stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.31e3
  • 1.31e3
  • 2.74e3
  • 3.24e3
  • 3.59e3
94.34
  • 94.34
  • 88.13
  • 85.94
  • 84.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002110gall bladder
  • UBERON:0000104life cycle
1.36e3
  • 1.36e3
94.11
  • 94.11
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
1.42e3
  • 1.42e3
93.83
  • 93.83
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
1.49e3
  • 1.49e3
93.54
  • 93.54
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
1.56e3
  • 1.56e3
93.26
  • 93.26
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.59e3
  • 1.59e3
  • 2.69e3
93.13
  • 93.13
  • 88.36
AEIR
  • AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.59e3
  • 1.59e3
93.12
  • 93.12
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
1.60e3
  • 1.60e3
93.06
  • 93.06
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.63e3
  • 1.63e3
92.93
  • 92.93
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.66e3
  • 1.66e3
  • 2.86e3
92.80
  • 92.80
  • 87.59
AEIR
  • AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.67e3
  • 1.67e3
92.78
  • 92.78
AEIR
  • AEIR
UBERON:0002507abdominal lymph node
  • UBERON:0018241prime adult stage
1.81e3
  • 1.81e3
92.16
  • 92.16
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0000104life cycle
1.82e3
  • 1.82e3
92.13
  • 92.13
AEIR
  • AEIR
UBERON:0007362omasum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.82e3
  • 1.82e3
  • 1.83e3
92.12
  • 92.12
  • 92.09
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
1.84e3
  • 1.84e3
92.05
  • 92.05
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.86e3
  • 1.86e3
  • 2.12e3
  • 2.64e3
91.93
  • 91.93
  • 90.80
  • 88.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.86e3
  • 1.86e3
  • 2.07e3
91.92
  • 91.92
  • 91.04
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.87e3
  • 1.87e3
91.90
  • 91.90
AEIR
  • AEIR
UBERON:0007361ruminant reticulum
  • UBERON:0018241prime adult stage
1.91e3
  • 1.91e3
91.72
  • 91.72
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.92e3
  • 1.92e3
91.70
  • 91.70
AEIR
  • AEIR
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
1.95e3
  • 1.95e3
91.56
  • 91.56
AEIR
  • AEIR
UBERON:0004180mammary gland fat
  • UBERON:0018241prime adult stage
1.96e3
  • 1.96e3
91.53
  • 91.53
AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0018241prime adult stage
2.01e3
  • 2.01e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • UBERON:0000104life cycle
2.02e3
  • 2.02e3
91.23
  • 91.23
AEIR
  • AEIR
UBERON:0004358caput epididymis
  • UBERON:0018241prime adult stage
2.09e3
  • 2.09e3
90.96
  • 90.96
AEIR
  • AEIR
UBERON:0008285rumen epithelium
  • UBERON:0018241prime adult stage
2.09e3
  • 2.09e3
90.96
  • 90.96
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.13e3
  • 2.13e3
  • 2.22e3
90.77
  • 90.77
  • 90.38
AEIR
  • AEIR
  • AEIR
UBERON:0001156ascending colon
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.15e3
  • 2.15e3
  • 2.16e3
90.71
  • 90.71
  • 90.64
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
2.16e3
  • 2.16e3
90.65
  • 90.65
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.16e3
  • 2.16e3
  • 2.18e3
90.63
  • 90.63
  • 90.56
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
2.18e3
  • 2.18e3
  • 4.18e3
90.56
  • 90.56
  • 81.89
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.18e3
  • 2.18e3
  • 2.22e3
90.54
  • 90.54
  • 90.38
AEIR
  • AEIR
  • AEIR
UBERON:0003984uterine tube infundibulum
  • UBERON:0000104life cycle
2.19e3
  • 2.19e3
90.50
  • 90.50
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000104life cycle
2.20e3
  • 2.20e3
90.49
  • 90.49
AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
2.21e3
  • 2.21e3
90.41
  • 90.41
AEIR
  • AEIR
UBERON:0007367surface of tongue
  • UBERON:0000104life cycle
2.23e3
  • 2.23e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
2.24e3
  • 2.24e3
90.30
  • 90.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.26e3
  • 2.26e3
  • 2.69e3
90.23
  • 90.23
  • 88.33
AEIR
  • AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
2.27e3
  • 2.27e3
90.15
  • 90.15
AEIR
  • AEIR
UBERON:0015869retropharyngeal lymph node
  • UBERON:0000104life cycle
2.36e3
  • 2.36e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
2.40e3
  • 2.40e3
89.58
  • 89.58
AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
2.41e3
  • 2.41e3
89.57
  • 89.57
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0018241prime adult stage
2.41e3
  • 2.41e3
89.55
  • 89.55
AEIR
  • AEIR
UBERON:0003126trachea
  • UBERON:0000104life cycle
2.44e3
  • 2.44e3
89.43
  • 89.43
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
2.50e3
  • 2.50e3
89.16
  • 89.16
AEIR
  • AEIR
UBERON:0001826nasal cavity mucosa
  • UBERON:0000104life cycle
2.53e3
  • 2.53e3
89.06
  • 89.06
AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
2.54e3
  • 2.54e3
89.00
  • 89.00
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
2.58e3
  • 2.58e3
88.83
  • 88.83
AEIR
  • AEIR
UBERON:0007358abomasum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.60e3
  • 2.60e3
  • 2.62e3
88.73
  • 88.73
  • 88.64
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
2.63e3
  • 2.63e3
88.61
  • 88.61
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0018241prime adult stage
2.68e3
  • 2.68e3
88.41
  • 88.41
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
2.68e3
  • 2.68e3
88.38
  • 88.38
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
2.73e3
  • 2.73e3
88.16
  • 88.16
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
2.74e3
  • 2.74e3
88.12
  • 88.12
AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
2.75e3
  • 2.75e3
88.09
  • 88.09
AEIR
  • AEIR
UBERON:0001158descending colon
  • UBERON:0000104life cycle
2.76e3
  • 2.76e3
88.06
  • 88.06
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.77e3
  • 2.77e3
87.99
  • 87.99
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
2.78e3
  • 2.78e3
87.94
  • 87.94
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
2.83e3
  • 2.83e3
87.75
  • 87.75
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000104life cycle
2.94e3
  • 2.94e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
3.00e3
  • 3.00e3
87.01
  • 87.01
AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
3.01e3
  • 3.01e3
86.97
  • 86.97
AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
3.08e3
  • 3.08e3
86.67
  • 86.67
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
3.30e3
  • 3.30e3
  • 3.54e3
  • 6.54e3
85.72
  • 85.72
  • 84.66
  • 71.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
3.31e3
  • 3.31e3
85.68
  • 85.68
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0000104life cycle
3.35e3
  • 3.35e3
85.50
  • 85.50
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.38e3
  • 3.38e3
  • 3.65e3
85.34
  • 85.34
  • 84.19
AEIR
  • AEIR
  • AEIR
UBERON:0000051fornix of vagina
  • UBERON:0000104life cycle
3.45e3
  • 3.45e3
85.05
  • 85.05
AEIR
  • AEIR
UBERON:0001000vas deferens
  • UBERON:0018241prime adult stage
3.49e3
  • 3.49e3
84.86
  • 84.86
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
3.51e3
  • 3.51e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.63e3
  • 3.63e3
  • 3.84e3
  • 4.36e3
  • 1.37e4
84.28
  • 84.28
  • 83.36
  • 81.12
  • 40.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
3.77e3
  • 3.77e3
83.65
  • 83.65
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
3.94e3
  • 3.94e3
82.94
  • 82.94
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
4.15e3
  • 4.15e3
82.03
  • 82.03
AEIR
  • AEIR
UBERON:0010153rumen papilla
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.44e3
  • 4.44e3
  • 4.51e3
80.74
  • 80.74
  • 80.44
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
4.74e3
  • 4.74e3
79.47
  • 79.47
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
4.93e3
  • 4.93e3
78.62
  • 78.62
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
5.57e3
  • 5.57e3
75.86
  • 75.86
AEIR
  • AEIR
CL:0000775neutrophil
  • UBERON:0018241prime adult stage
6.56e3
  • 6.56e3
71.57
  • 71.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Mammalia13 species15 genesCompare expression
Amniota15 species17 genesCompare expression
Tetrapoda16 species18 genesCompare expression
Euteleostomi17 species19 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000017265.

Cross-references

EnsemblENSBTAG00000017265 (VBP1)
HGNCHGNC:12662 (VBP1)
EMBLDAAA02070017, DAAA02070018
Uniprot/SPTREMBLG5E5K1, G5E5K1_BOVIN

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