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B. taurus Gene: CDH9 - ENSBTAG00000018234 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000018234
NameCDH9
Descriptioncadherin 9, type 2 (T1-cadherin) [Source:HGNC Symbol;Acc:HGNC:1768]
OrganismBos taurus (cattle)
Orthologs(s)17 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0018241prime adult stage
5.94e3
  • 5.94e3
74.24
  • 74.24
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
6.72e3
  • 6.72e3
70.86
  • 70.86
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
7.38e3
  • 7.38e3
68.00
  • 68.00
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
8.06e3
  • 8.06e3
65.06
  • 65.06
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
8.65e3
  • 8.65e3
62.52
  • 62.52
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
9.79e3
  • 9.79e3
57.57
  • 57.57
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
49.84
  • 49.84
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
49.76
  • 49.76
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
1.19e4
  • 1.19e4
48.43
  • 48.43
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
48.26
  • 48.26
AEIR
  • AEIR
UBERON:0003126trachea
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
47.73
  • 47.73
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
44.96
  • 44.96
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.27e4
  • 1.27e4
44.91
  • 44.91
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.30e4
  • 1.30e4
43.74
  • 43.74
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
42.34
  • 42.34
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
39.35
  • 39.35
AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
36.31
  • 36.31
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
36.03
  • 36.03
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.62e4
  • 1.62e4
  • 1.78e4
29.67
  • 29.67
  • 23.02
AEIR
  • AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
29.11
  • 29.11
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
26.41
  • 26.41
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.88e4
  • 1.88e4
18.69
  • 18.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000018234.

Paralogs (same species)

Cross-references

EnsemblENSBTAG00000018234 (CDH9)
HGNCHGNC:1768 (CDH9)
EMBLDAAA02050827, DAAA02050828
Uniprot/SPTREMBLE1BHE0, E1BHE0_BOVIN

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