B. taurus Gene: SPTLC2 - ENSBTAG00000020480 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000020480
NameSPTLC2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:HGNC Symbol;Acc:HGNC:11278]
OrganismBos taurus (cattle)
Synonym(s)hlcb2a, kiaa0526, lcb2, lcb2a
Orthologs(s)27 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.38e3
  • 1.38e3
94.04
  • 94.04
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.52e3
  • 1.52e3
  • 2.54e3
93.43
  • 93.43
  • 88.99
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018241prime adult stage
1.68e3
  • 1.68e3
92.71
  • 92.71
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.74e3
  • 1.74e3
  • 6.85e3
92.48
  • 92.48
  • 70.31
AEIR
  • AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.78e3
  • 1.78e3
  • 6.80e3
  • 1.21e4
92.27
  • 92.27
  • 70.54
  • 47.69
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.82e3
  • 1.82e3
  • 1.87e3
  • 3.44e3
92.10
  • 92.10
  • 91.92
  • 85.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000104life cycle
1.84e3
  • 1.84e3
92.05
  • 92.05
AEIR
  • AEIR
UBERON:0010153rumen papilla
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.97e3
  • 1.97e3
  • 1.98e3
91.48
  • 91.48
  • 91.41
AEIR
  • AEIR
  • AEIR
CL:0000775neutrophil
  • UBERON:0018241prime adult stage
1.97e3
  • 1.97e3
91.45
  • 91.45
AEIR
  • AEIR
UBERON:0007358abomasum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.19e3
  • 2.19e3
  • 2.19e3
90.52
  • 90.52
  • 90.50
AEIR
  • AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
2.40e3
  • 2.40e3
89.62
  • 89.62
AEIR
  • AEIR
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
2.41e3
  • 2.41e3
89.57
  • 89.57
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
2.51e3
  • 2.51e3
89.15
  • 89.15
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
2.57e3
  • 2.57e3
88.86
  • 88.86
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.61e3
  • 2.61e3
  • 4.34e3
  • 4.72e3
  • 4.97e3
88.68
  • 88.68
  • 81.21
  • 79.54
  • 78.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007367surface of tongue
  • UBERON:0000104life cycle
2.64e3
  • 2.64e3
88.54
  • 88.54
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.75e3
  • 2.75e3
  • 3.18e3
88.08
  • 88.08
  • 86.21
AEIR
  • AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
2.93e3
  • 2.93e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0007361ruminant reticulum
  • UBERON:0018241prime adult stage
2.97e3
  • 2.97e3
87.14
  • 87.14
AEIR
  • AEIR
UBERON:0001156ascending colon
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.17e3
  • 3.17e3
  • 3.18e3
86.26
  • 86.26
  • 86.23
AEIR
  • AEIR
  • AEIR
UBERON:0007362omasum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.27e3
  • 3.27e3
  • 3.31e3
85.82
  • 85.82
  • 85.67
AEIR
  • AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
3.39e3
  • 3.39e3
85.32
  • 85.32
AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
3.44e3
  • 3.44e3
85.10
  • 85.10
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0018241prime adult stage
3.48e3
  • 3.48e3
84.91
  • 84.91
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
3.58e3
  • 3.58e3
  • 5.12e3
84.47
  • 84.47
  • 77.81
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.62e3
  • 3.62e3
84.33
  • 84.33
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
3.70e3
  • 3.70e3
83.96
  • 83.96
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0018241prime adult stage
4.02e3
  • 4.02e3
82.56
  • 82.56
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.20e3
  • 4.20e3
  • 4.35e3
81.79
  • 81.79
  • 81.14
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.21e3
  • 4.21e3
  • 4.43e3
  • 4.84e3
81.74
  • 81.74
  • 80.81
  • 79.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.37e3
  • 4.37e3
  • 4.41e3
81.07
  • 81.07
  • 80.89
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
4.40e3
  • 4.40e3
80.94
  • 80.94
AEIR
  • AEIR
UBERON:0034908scapular muscle
  • UBERON:0000104life cycle
4.44e3
  • 4.44e3
80.77
  • 80.77
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
4.49e3
  • 4.49e3
80.56
  • 80.56
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.52e3
  • 4.52e3
  • 4.53e3
80.40
  • 80.40
  • 80.37
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
4.58e3
  • 4.58e3
80.14
  • 80.14
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0018241prime adult stage
4.62e3
  • 4.62e3
79.97
  • 79.97
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
4.84e3
  • 4.84e3
79.04
  • 79.04
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.84e3
  • 4.84e3
  • 7.34e3
79.03
  • 79.03
  • 68.20
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
4.85e3
  • 4.85e3
79.00
  • 79.00
AEIR
  • AEIR
UBERON:0000056ureter
  • UBERON:0000104life cycle
4.88e3
  • 4.88e3
78.85
  • 78.85
AEIR
  • AEIR
UBERON:0001158descending colon
  • UBERON:0000104life cycle
4.94e3
  • 4.94e3
78.59
  • 78.59
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.98e3
  • 4.98e3
  • 6.41e3
78.43
  • 78.43
  • 72.21
AEIR
  • AEIR
  • AEIR
UBERON:0002110gall bladder
  • UBERON:0000104life cycle
4.99e3
  • 4.99e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0000104life cycle
5.00e3
  • 5.00e3
78.34
  • 78.34
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • UBERON:0000104life cycle
5.04e3
  • 5.04e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
5.11e3
  • 5.11e3
77.83
  • 77.83
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
5.16e3
  • 5.16e3
77.63
  • 77.63
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
5.20e3
  • 5.20e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0000057urethra
  • UBERON:0000104life cycle
5.21e3
  • 5.21e3
77.43
  • 77.43
AEIR
  • AEIR
UBERON:0000051fornix of vagina
  • UBERON:0000104life cycle
5.27e3
  • 5.27e3
77.16
  • 77.16
AEIR
  • AEIR
UBERON:0004358caput epididymis
  • UBERON:0018241prime adult stage
5.28e3
  • 5.28e3
77.12
  • 77.12
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
5.32e3
  • 5.32e3
76.95
  • 76.95
AEIR
  • AEIR
UBERON:0004180mammary gland fat
  • UBERON:0018241prime adult stage
5.36e3
  • 5.36e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0015869retropharyngeal lymph node
  • UBERON:0000104life cycle
5.53e3
  • 5.53e3
76.04
  • 76.04
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.62e3
  • 5.62e3
  • 5.63e3
75.65
  • 75.65
  • 75.60
AEIR
  • AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
5.67e3
  • 5.67e3
75.42
  • 75.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.79e3
  • 5.79e3
  • 7.90e3
74.90
  • 74.90
  • 65.75
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.88e3
  • 5.88e3
  • 7.34e3
  • 7.47e3
  • 1.37e4
74.52
  • 74.52
  • 68.17
  • 67.61
  • 40.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.90e3
  • 5.90e3
  • 6.89e3
74.43
  • 74.43
  • 70.13
AEIR
  • AEIR
  • AEIR
UBERON:0001000vas deferens
  • UBERON:0018241prime adult stage
5.95e3
  • 5.95e3
74.23
  • 74.23
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000104life cycle
6.31e3
  • 6.31e3
72.66
  • 72.66
AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
6.33e3
  • 6.33e3
72.55
  • 72.55
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
6.37e3
  • 6.37e3
72.41
  • 72.41
AEIR
  • AEIR
UBERON:0002000gluteal muscle
  • UBERON:0000104life cycle
6.38e3
  • 6.38e3
72.34
  • 72.34
AEIR
  • AEIR
UBERON:0007625pigment epithelium of eye
  • UBERON:0000104life cycle
6.38e3
  • 6.38e3
72.34
  • 72.34
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0000104life cycle
6.42e3
  • 6.42e3
72.19
  • 72.19
AEIR
  • AEIR
UBERON:0001374biceps femoris
  • UBERON:0000104life cycle
6.44e3
  • 6.44e3
72.07
  • 72.07
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0000104life cycle
6.48e3
  • 6.48e3
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
6.67e3
  • 6.67e3
71.08
  • 71.08
AEIR
  • AEIR
UBERON:0000378tongue muscle
  • UBERON:0000104life cycle
6.69e3
  • 6.69e3
71.02
  • 71.02
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
6.71e3
  • 6.71e3
70.91
  • 70.91
AEIR
  • AEIR
UBERON:0001296myometrium
  • UBERON:0000104life cycle
6.73e3
  • 6.73e3
70.85
  • 70.85
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.83e3
  • 6.83e3
  • 7.87e3
70.39
  • 70.39
  • 65.91
AEIR
  • AEIR
  • AEIR
UBERON:0001378rectus femoris
  • UBERON:0000104life cycle
6.84e3
  • 6.84e3
70.38
  • 70.38
AEIR
  • AEIR
UBERON:0003984uterine tube infundibulum
  • UBERON:0000104life cycle
6.84e3
  • 6.84e3
70.35
  • 70.35
AEIR
  • AEIR
UBERON:0001375semitendinosus
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
7.02e3
  • 7.02e3
  • 7.25e3
  • 8.01e3
69.57
  • 69.57
  • 68.58
  • 65.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002367prostate gland
  • UBERON:0018241prime adult stage
7.16e3
  • 7.16e3
68.98
  • 68.98
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0000104life cycle
7.31e3
  • 7.31e3
68.31
  • 68.31
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
7.41e3
  • 7.41e3
67.89
  • 67.89
AEIR
  • AEIR
UBERON:0001509triceps brachii
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.45e3
  • 7.45e3
  • 7.46e3
67.72
  • 67.72
  • 67.67
AEIR
  • AEIR
  • AEIR
UBERON:0002383supraspinatus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.45e3
  • 7.45e3
  • 7.46e3
67.70
  • 67.70
  • 67.66
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
7.55e3
  • 7.55e3
67.30
  • 67.30
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.57e3
  • 7.57e3
  • 7.57e3
67.18
  • 67.18
  • 67.18
AEIR
  • AEIR
  • AEIR
UBERON:0001739laryngeal cartilage
  • UBERON:0000104life cycle
7.67e3
  • 7.67e3
66.76
  • 66.76
AEIR
  • AEIR
UBERON:0001371gluteus medius
  • UBERON:0000104life cycle
7.74e3
  • 7.74e3
66.44
  • 66.44
AEIR
  • AEIR
UBERON:0003126trachea
  • UBERON:0000104life cycle
7.93e3
  • 7.93e3
65.62
  • 65.62
AEIR
  • AEIR
UBERON:0001477infraspinatus muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
8.15e3
  • 8.15e3
  • 8.17e3
64.67
  • 64.67
  • 64.60
AEIR
  • AEIR
  • AEIR
UBERON:0001886choroid plexus
  • UBERON:0018241prime adult stage
8.23e3
  • 8.23e3
64.35
  • 64.35
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
8.31e3
  • 8.31e3
  • 9.21e3
63.97
  • 63.97
  • 60.10
AEIR
  • AEIR
  • AEIR
UBERON:0001381semimembranosus muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.33e3
  • 8.33e3
  • 8.92e3
63.92
  • 63.92
  • 61.34
AEIR
  • AEIR
  • AEIR
UBERON:0002512corpus luteum
  • UBERON:0000104life cycle
8.52e3
  • 8.52e3
63.08
  • 63.08
AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • UBERON:0000104life cycle
8.60e3
  • 8.60e3
62.73
  • 62.73
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
9.47e3
  • 9.47e3
58.96
  • 58.96
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
9.65e3
  • 9.65e3
58.16
  • 58.16
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
9.77e3
  • 9.77e3
57.64
  • 57.64
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
9.84e3
  • 9.84e3
57.35
  • 57.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000020480.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSBTAG00000020480.

Cross-references

EnsemblENSBTAG00000020480 (SPTLC2)
HGNCHGNC:11278 (SPTLC2)
EMBLBC142539, DAAA02029724, DAAA02029725
Uniprot/SPTREMBLA5PKM3, A5PKM3_BOVIN

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