B. taurus Gene: PTCHD4 - ENSBTAG00000021415 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000021415
NamePTCHD4
Descriptionpatched domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21345]
OrganismBos taurus (cattle)
Synonym(s)c6orf138, dj402h5.2, flj41841
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
39.94
  • 39.94
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
38.23
  • 38.23
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
37.94
  • 37.94
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
37.35
  • 37.35
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
35.98
  • 35.98
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
  • 1.55e4
35.30
  • 35.30
  • 32.70
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
35.21
  • 35.21
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
34.25
  • 34.25
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.68e4
  • 1.68e4
27.19
  • 27.19
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
  • 1.77e4
27.10
  • 27.10
  • 23.40
AEIR
  • AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
1.70e4
  • 1.70e4
26.32
  • 26.32
AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
1.74e4
  • 1.74e4
24.47
  • 24.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000021415.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSBTAG00000021415.

Cross-references

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