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B. taurus Gene: SLC17A6 - ENSBTAG00000038347 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000038347
NameSLC17A6
Descriptionsolute carrier family 17 (vesicular glutamate transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:16703]
OrganismBos taurus (cattle)
Synonym(s)dnpi, vglut2
Orthologs(s)27 orthologs
Paralog(s)34 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.72e3
  • 1.72e3
92.57
  • 92.57
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.50e3
  • 2.50e3
89.19
  • 89.19
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
3.69e3
  • 3.69e3
84.01
  • 84.01
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
4.08e3
  • 4.08e3
82.30
  • 82.30
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000068embryo stage
5.58e3
  • 5.58e3
75.81
  • 75.81
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0000104life cycle
8.00e3
  • 8.00e3
65.32
  • 65.32
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
8.93e3
  • 8.93e3
61.30
  • 61.30
AEIR
  • AEIR
UBERON:0016538temporal cortex
  • UBERON:0000104life cycle
9.98e3
  • 9.98e3
56.73
  • 56.73
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0001374biceps femoris
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
51.14
  • 51.14
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.14e4
  • 1.14e4
50.48
  • 50.48
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
42.70
  • 42.70
AEIR
  • AEIR
UBERON:0001156ascending colon
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
  • 1.34e4
42.12
  • 42.12
  • 42.03
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
39.91
  • 39.91
AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
36.47
  • 36.47
AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
35.78
  • 35.78
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
34.49
  • 34.49
AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
34.21
  • 34.21
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
28.83
  • 28.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species20 genesCompare expression
Bilateria26 species27 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000038347.

Paralogs (same species)

Cross-references

EnsemblENSBTAG00000038347 (SLC17A6)
HGNCHGNC:16703 (SLC17A6)
EMBLBC147973
Uniprot/SWISSPROTA6QLI1, VGLU2_BOVIN

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