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B. taurus Gene: HMGA2 - ENSBTAG00000044118 - Bos taurus (cattle)

General information

Ensembl IDENSBTAG00000044118
NameHMGA2
Descriptionhigh mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
OrganismBos taurus (cattle)
Synonym(s)babl, hmgic, lipo
Orthologs(s)9 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004716conceptus
  • UBERON:0000068embryo stage
1.10e4
  • 1.10e4
52.52
  • 52.52
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0000104life cycle
1.15e4
  • 1.15e4
50.03
  • 50.03
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
  • 1.79e4
  • 1.96e4
47.69
  • 47.69
  • 22.34
  • 14.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001158descending colon
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
46.57
  • 46.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.33e4
  • 1.37e4
  • 1.60e4
46.30
  • 46.30
  • 42.49
  • 40.61
  • 30.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
45.80
  • 45.80
AEIR
  • AEIR
UBERON:0004180mammary gland fat
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
45.68
  • 45.68
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.55e4
  • 1.99e4
45.38
  • 45.38
  • 33.03
  • 13.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
  • 1.29e4
43.94
  • 43.94
  • 43.94
AEIR
  • AEIR
  • AEIR
UBERON:0007361ruminant reticulum
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
43.75
  • 43.75
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
  • 1.46e4
42.78
  • 42.78
  • 36.53
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
42.30
  • 42.30
AEIR
  • AEIR
UBERON:0001103diaphragm
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
40.93
  • 40.93
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
  • 1.94e4
38.26
  • 38.26
  • 16.07
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
36.28
  • 36.28
AEIR
  • AEIR
UBERON:0008285rumen epithelium
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
35.88
  • 35.88
AEIR
  • AEIR
UBERON:0002110gall bladder
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
35.29
  • 35.29
AEIR
  • AEIR
UBERON:0003309floor plate of diencephalon
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
34.92
  • 34.92
AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
34.73
  • 34.73
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
33.97
  • 33.97
AEIR
  • AEIR
UBERON:0007365rumen
  • UBERON:0000112sexually immature stage
1.53e4
  • 1.53e4
33.90
  • 33.90
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
31.96
  • 31.96
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
31.78
  • 31.78
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
31.64
  • 31.64
AEIR
  • AEIR
CL:0000711cumulus cell
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
31.11
  • 31.11
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
  • 1.91e4
30.90
  • 30.90
  • 17.25
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
30.11
  • 30.11
AEIR
  • AEIR
UBERON:0012648ampulla of uterine tube
  • UBERON:0000104life cycle
1.63e4
  • 1.63e4
29.44
  • 29.44
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
27.60
  • 27.60
AEIR
  • AEIR
CL:0000503theca cell
  • UBERON:0018241prime adult stage
1.70e4
  • 1.70e4
26.52
  • 26.52
AEIR
  • AEIR
UBERON:0001913milk
  • UBERON:0000113post-juvenile adult stage
1.72e4
  • 1.72e4
25.56
  • 25.56
AEIR
  • AEIR
UBERON:0016632isthmus of fallopian tube
  • UBERON:0000104life cycle
1.74e4
  • 1.74e4
24.40
  • 24.40
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.78e4
  • 1.78e4
  • 1.79e4
22.98
  • 22.98
  • 22.41
AEIR
  • AEIR
  • AEIR
UBERON:0002247uterine horn
  • UBERON:0018241prime adult stage
1.79e4
  • 1.79e4
22.54
  • 22.54
AEIR
  • AEIR
UBERON:0003984uterine tube infundibulum
  • UBERON:0000104life cycle
1.80e4
  • 1.80e4
22.15
  • 22.15
AEIR
  • AEIR
UBERON:0005386olfactory segment of nasal mucosa
  • UBERON:0000104life cycle
1.85e4
  • 1.85e4
19.72
  • 19.72
AEIR
  • AEIR
CL:0000738leukocyte
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.87e4
  • 1.87e4
  • 1.95e4
18.95
  • 18.95
  • 15.28
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria1 species1 geneCompare expression
Boreoeutheria7 species7 genesCompare expression
Amniota8 species8 genesCompare expression
Tetrapoda9 species9 genesCompare expression

Orthology information comes from OMA : ENSBTAG00000044118.

Cross-references

EnsemblENSBTAG00000044118 (HMGA2)
HGNCHGNC:5009 (HMGA2)
EMBLDAAA02013319
Uniprot/SPTREMBLE1BPQ4, E1BPQ4_BOVIN

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