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C. lupus familiaris Gene: CDH20 - ENSCAFG00000000086 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000000086
NameCDH20
Descriptioncadherin 20, type 2 [Source:HGNC Symbol;Acc:HGNC:1760]
OrganismCanis lupus familiaris (dog)
Synonym(s)cdh7, cdh7l3
Orthologs(s)18 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
4.47e3
  • 4.47e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
5.30e3
  • 5.30e3
76.30
  • 76.30
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
5.36e3
  • 5.36e3
76.05
  • 76.05
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.66e3
  • 6.66e3
70.20
  • 70.20
AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
6.68e3
  • 6.68e3
70.15
  • 70.15
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
7.05e3
  • 7.05e3
68.47
  • 68.47
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
7.33e3
  • 7.33e3
67.24
  • 67.24
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
8.03e3
  • 8.03e3
64.10
  • 64.10
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
9.60e3
  • 9.60e3
  • 9.86e3
57.06
  • 57.06
  • 55.93
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
9.82e3
  • 9.82e3
56.10
  • 56.10
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.21e4
  • 1.21e4
  • 1.23e4
  • 1.33e4
45.96
  • 45.96
  • 45.11
  • 40.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.28e4
  • 1.28e4
42.65
  • 42.65
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
  • 1.38e4
40.30
  • 40.30
  • 38.32
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
  • 1.40e4
38.48
  • 38.48
  • 37.26
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.40e4
  • 1.40e4
  • 1.79e4
37.29
  • 37.29
  • 20.03
AEIR
  • AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
37.05
  • 37.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
37.04
  • 37.04
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
  • 1.47e4
37.02
  • 37.02
  • 34.41
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
1.41e4
  • 1.41e4
36.80
  • 36.80
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
36.68
  • 36.68
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
  • 1.58e4
35.78
  • 35.78
  • 29.47
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
1.46e4
  • 1.46e4
34.60
  • 34.60
AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
1.47e4
  • 1.47e4
34.20
  • 34.20
AEIR
  • AEIR
UBERON:0002079left cardiac atrium
  • UBERON:0007222late adult stage
1.48e4
  • 1.48e4
33.79
  • 33.79
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
30.56
  • 30.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
  • 1.56e4
  • 1.62e4
  • 1.64e4
  • 1.78e4
30.50
  • 30.50
  • 30.45
  • 27.76
  • 26.46
  • 20.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
29.94
  • 29.94
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
29.44
  • 29.44
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
1.60e4
  • 1.60e4
28.25
  • 28.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000000086.

Paralogs (same species)

Paralogy information comes from OMA : ENSCAFG00000000086.

Cross-references

EnsemblENSCAFG00000000086 (CDH20)
HGNCHGNC:1760 (CDH20)
EMBLAAEX03000095
Uniprot/SPTREMBLF1PVD5, F1PVD5_CANLF

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