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C. lupus familiaris Gene: PRDM4 - ENSCAFG00000001788 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000001788
NamePRDM4
DescriptionPR domain containing 4 [Source:HGNC Symbol;Acc:HGNC:9348]
OrganismCanis lupus familiaris (dog)
Synonym(s)pfm1
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002046thyroid gland
  • UBERON:0007222late adult stage
2.24e3
  • 2.24e3
90.00
  • 90.00
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
4.50e3
  • 4.50e3
79.87
  • 79.87
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.69e3
  • 4.69e3
  • 6.03e3
79.02
  • 79.02
  • 73.05
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.29e3
  • 5.29e3
  • 9.20e3
76.36
  • 76.36
  • 58.84
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
5.31e3
  • 5.31e3
76.27
  • 76.27
AEIR
  • AEIR
CL:0000312keratinocyte
  • UBERON:0000104life cycle
5.35e3
  • 5.35e3
76.07
  • 76.07
AEIR
  • AEIR
UBERON:0000362renal medulla
  • UBERON:0007222late adult stage
5.37e3
  • 5.37e3
76.00
  • 76.00
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0007222late adult stage
5.38e3
  • 5.38e3
75.93
  • 75.93
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
5.40e3
  • 5.40e3
  • 6.72e3
75.86
  • 75.86
  • 69.96
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0007222late adult stage
5.72e3
  • 5.72e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0000004nose
  • UBERON:0000104life cycle
5.88e3
  • 5.88e3
73.70
  • 73.70
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.00e3
  • 6.00e3
  • 7.67e3
73.16
  • 73.16
  • 65.72
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000104life cycle
6.03e3
  • 6.03e3
73.05
  • 73.05
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
6.06e3
  • 6.06e3
72.90
  • 72.90
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.23e3
  • 6.23e3
  • 6.95e3
  • 9.32e3
72.14
  • 72.14
  • 68.95
  • 58.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003382cardiac muscle of left ventricle
  • UBERON:0000104life cycle
6.25e3
  • 6.25e3
72.05
  • 72.05
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.36e3
  • 6.36e3
  • 6.44e3
71.54
  • 71.54
  • 71.19
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
6.39e3
  • 6.39e3
  • 9.67e3
71.42
  • 71.42
  • 56.77
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
6.60e3
  • 6.60e3
70.49
  • 70.49
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
6.64e3
  • 6.64e3
  • 8.18e3
70.31
  • 70.31
  • 63.42
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
6.66e3
  • 6.66e3
  • 7.72e3
  • 7.90e3
70.21
  • 70.21
  • 65.48
  • 64.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.68e3
  • 6.68e3
  • 7.86e3
70.13
  • 70.13
  • 64.88
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
6.71e3
  • 6.71e3
69.99
  • 69.99
AEIR
  • AEIR
UBERON:0002418cartilage tissue
  • UBERON:0007222late adult stage
6.74e3
  • 6.74e3
69.85
  • 69.85
AEIR
  • AEIR
UBERON:0002108small intestine
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
6.83e3
  • 6.83e3
  • 7.64e3
69.46
  • 69.46
  • 65.84
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
6.91e3
  • 6.91e3
  • 8.62e3
69.09
  • 69.09
  • 61.47
AEIR
  • AEIR
  • AEIR
UBERON:0002073hair follicle
  • UBERON:0000104life cycle
7.03e3
  • 7.03e3
68.55
  • 68.55
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
7.06e3
  • 7.06e3
68.45
  • 68.45
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
7.14e3
  • 7.14e3
68.09
  • 68.09
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0007222late adult stage
7.30e3
  • 7.30e3
67.35
  • 67.35
AEIR
  • AEIR
UBERON:0001911mammary gland
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.36e3
  • 7.36e3
  • 7.90e3
67.08
  • 67.08
  • 64.68
AEIR
  • AEIR
  • AEIR
UBERON:0001259mucosa of urinary bladder
  • UBERON:0000104life cycle
7.36e3
  • 7.36e3
67.08
  • 67.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.41e3
  • 7.41e3
  • 7.80e3
66.88
  • 66.88
  • 65.11
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0000113post-juvenile adult stage
7.51e3
  • 7.51e3
  • 7.73e3
  • 8.99e3
66.44
  • 66.44
  • 65.42
  • 59.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
7.64e3
  • 7.64e3
65.85
  • 65.85
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
7.74e3
  • 7.74e3
  • 7.95e3
65.39
  • 65.39
  • 64.44
AEIR
  • AEIR
  • AEIR
UBERON:0002080heart right ventricle
  • UBERON:0007222late adult stage
7.80e3
  • 7.80e3
65.10
  • 65.10
AEIR
  • AEIR
UBERON:0002135mitral valve
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.90e3
  • 7.90e3
  • 8.41e3
64.67
  • 64.67
  • 62.39
AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • UBERON:0007222late adult stage
7.92e3
  • 7.92e3
64.60
  • 64.60
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.01e3
  • 8.01e3
  • 8.08e3
64.18
  • 64.18
  • 63.85
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
8.06e3
  • 8.06e3
63.98
  • 63.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.10e3
  • 8.10e3
  • 9.47e3
  • 1.01e4
  • 1.04e4
  • 1.13e4
63.79
  • 63.79
  • 57.64
  • 55.02
  • 53.66
  • 49.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002078right cardiac atrium
  • UBERON:0007222late adult stage
8.19e3
  • 8.19e3
63.36
  • 63.36
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0007222late adult stage
8.41e3
  • 8.41e3
62.38
  • 62.38
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
8.46e3
  • 8.46e3
62.16
  • 62.16
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
8.46e3
  • 8.46e3
62.16
  • 62.16
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.49e3
  • 8.49e3
62.01
  • 62.01
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
8.57e3
  • 8.57e3
61.68
  • 61.68
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
8.69e3
  • 8.69e3
61.14
  • 61.14
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
8.73e3
  • 8.73e3
60.97
  • 60.97
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.13e3
  • 9.13e3
59.17
  • 59.17
AEIR
  • AEIR
UBERON:0001723tongue
  • UBERON:0000113post-juvenile adult stage
9.32e3
  • 9.32e3
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
55.03
  • 55.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000001788.

Cross-references

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