C. lupus familiaris Gene: PTCHD4 - ENSCAFG00000002100 - Canis lupus familiaris (dog)

General information

Ensembl IDENSCAFG00000002100
NamePTCHD4
Descriptionpatched domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21345]
OrganismCanis lupus familiaris (dog)
Synonym(s)c6orf138, dj402h5.2, flj41841
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
  • 1.60e4
49.63
  • 49.63
  • 28.51
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
1.23e4
  • 1.23e4
  • 1.44e4
44.92
  • 44.92
  • 35.54
AEIR
  • AEIR
  • AEIR
UBERON:0002021occipital lobe
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
41.97
  • 41.97
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
1.31e4
  • 1.31e4
  • 1.35e4
41.20
  • 41.20
  • 39.81
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
  • 1.89e4
38.01
  • 38.01
  • 15.57
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000112sexually immature stage
1.42e4
  • 1.42e4
36.29
  • 36.29
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
34.54
  • 34.54
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0007222late adult stage
1.47e4
  • 1.47e4
34.35
  • 34.35
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
34.33
  • 34.33
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
31.94
  • 31.94
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0007222late adult stage
1.54e4
  • 1.54e4
31.14
  • 31.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 2.08e4
30.33
  • 30.33
  • 7.15
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
1.62e4
  • 1.62e4
27.39
  • 27.39
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
25.80
  • 25.80
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000112sexually immature stage
1.68e4
  • 1.68e4
24.80
  • 24.80
AEIR
  • AEIR
UBERON:0001235adrenal cortex
  • UBERON:0018241prime adult stage
1.69e4
  • 1.69e4
24.63
  • 24.63
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.80e4
  • 1.80e4
19.56
  • 19.56
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Carnivora1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSCAFG00000002100.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSCAFG00000002100.

Cross-references

EnsemblENSCAFG00000002100 (PTCHD4)
HGNCHGNC:21345 (PTCHD4)
EMBLAAEX03008381
Uniprot/SPTREMBLE2RPY7, E2RPY7_CANLF

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